CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0636600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os04g0636600 AK111077.1 - Conserved hypothetical protein 1e+0 At1g19870 iqd32 (IQ-domain 32) S.X. H.G.
0.47 62.3 Os06g0677500 AK102430.1 - Protein prenyltransferase domain containingprotein 1e-9 At4g24490 protein prenyltransferase S.X. H.G.
0.40 51.1 Os02g0662200 AK063236.1 - YbaK/prolyl-tRNA synthetase associated regiondomain containing protein 1e-4 At4g16510 YbaK/prolyl-tRNA synthetase-related S.X. H.G.
0.27 27.5 Os02g0101100 AK068038.1 - Initiation factor 3 family protein 1e+0 At5g12870 MYB46 (MYB DOMAIN PROTEIN 46) S.X. H.G.
0.23 21.2 Os08g0162000 BX901451 - Nonaspanin (TM9SF) family protein 9e-35 At2g01970 endomembrane protein 70, putative S.X. H.G.
0.23 21.2 Os02g0462900 CF328460 - Prefoldin beta-like family protein 9e-2 At2g07340 prefoldin-related KE2 family protein S.X. H.G.
0.17 12.6 Os02g0606100 AU162342 - Quinoprotein amine dehydrogenase, beta chain-likedomain containing protein 6e-7 At1g73180 eukaryotic translation initiation factor-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.1 97.1 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.8 96.5 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
4.7 96.4 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.6 96.3 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
4.3 96.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.3 96.1 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.3 96.1 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.2 96.0 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.0 95.9 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.0 95.9 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 40 Os03g0699200 AK066652.1 - Pescadillo, N-terminal domain containing protein 1e-12 At5g14520 pescadillo-related C.G. S.X.
0.01 6e-1 38 Os01g0944100 AK103580.1 - Conserved hypothetical protein 3e+0 At4g12860 UNE14 (unfertilized embryo sac 14) C.G. S.X.
0.01 6e-1 38 Os02g0637800 AK069750.1 - Protein of unknown function DUF639 family protein 2e-2 At5g23390 unknown protein C.G. S.X.
0.01 6e-1 38 Os07g0137000 AK110988.1 - Myb, DNA-binding domain containing protein 5e+0 At4g13160 unknown protein C.G. S.X.
0.01 6e-1 38 Os08g0539900 9636.m04345 - - 1e-1 At4g16930 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
0.01 2e+0 36 Os06g0697200 9634.m04707 - DEAD-box protein abstrakt 8e-14 At4g33370 DEAD-box protein abstrakt, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Arabidopsis thaliana At1g19870 838575 iqd32 (IQ-domain 32) F:calmodulin binding;P:biological_process unknown;C:cytosol, nucleus, plasma membrane, chloroplast envelope;MOFBPVA - - - C.G. S.X.
0.03 3e-11 71 Glycine max Gma.7979.1.S1_at BQ612325 - - 8e-10 At4g39690 unknown protein C.G. S.X.
0.42 0 811 Hordeum vulgare Contig13007_at Contig13007 - - 2e-8 At4g39690 unknown protein C.G. S.X.
0.06 5e-19 97 Populus trichocarpa PtpAffx.50727.1.A1_at CV236791 hypothetical protein - 2e-9 At4g39690 unknown protein C.G. S.X.
0.48 0 1417 Triticum aestivum Ta.26716.1.A1_at CD491281 - - 2e+0 At2g30810 gibberellin-regulated family protein C.G. S.X.
0.01 9e-2 38 Vitis vinifera 1622349_at CF208839 hypothetical protein LOC100254202 - 1e-18 At5g22480 zinc finger (ZPR1-type) family protein C.G. S.X.
0.13 3e-18 93 Zea mays Zm.8024.1.A1_at BM072669 - - 4e-1 At3g49430 SRp34a (Ser/Arg-rich protein 34a) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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