CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0623500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.79 93.6 Os04g0623500 AK068638.1 - (S)-2-hydroxy-acid oxidase, peroxisomal (EC1.1.3.15) (Glycolate oxidase) (GOX) (Short chainalpha-hydroxy acid oxidase) 7e-29 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative S.X. H.G.
0.39 48.3 Os05g0543100 AK065138.1 - Clathrin adaptor complex, medium chain familyprotein 3e-65 At1g60780 HAP13 (HAPLESS 13) S.X. H.G.
0.38 46.9 Os06g0598800 AK101377.1 - Fatty acid elongase 1-like protein 1e-28 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) S.X. H.G.
0.34 40.0 Os01g0226300 AK059314.1 - Reticulon family protein 4e-2 At2g46170 reticulon family protein (RTNLB5) S.X. H.G.
0.33 38.8 Os10g0477100 AK067258.1 - Ankyrin-like protein 5e-43 At4g14360 dehydration-responsive protein-related S.X. H.G.
0.31 34.5 Os11g0168100 CR283190 - Syntaxin 61 (AtSYP61) (Osmotic stess-sensitivemutant 1) 4e+0 At4g09090 glycosyl hydrolase family protein 17 S.X. H.G.
0.30 32.7 Os01g0969100 AK070623.1 - Conserved hypothetical protein 9e-75 At1g08200 AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2) S.X. H.G.
0.29 31.1 Os03g0780200 AK107920.1 - Conserved hypothetical protein 8e-2 At5g17130 cysteine-type peptidase S.X. H.G.
0.28 31.1 Os03g0713100 BE040116 - Dynamin family protein 2e-6 At1g14830 ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C) S.X. H.G.
0.28 31.1 Os03g0836000 AK063598.1 - Actin 7 (Actin 2) 0 At5g09810 ACT7 (ACTIN 7) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.2 98.4 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
12.7 98.4 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
9.7 98.0 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
9.7 98.0 GSM99863 TCHW P6_m103 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
9.6 97.9 GSM99862 TCHW P5_m103 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
9.4 97.9 GSM99861 TCHW P4_m103 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
9.3 97.9 GSM99875 TCHW P18_agami salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
8.9 97.8 GSM99873 TCHW P16_agami salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
8.7 97.8 GSM99859 TCHW P2_m103 control, biological rep2 GSE4438 Expression data from rice under salinity stress
8.0 97.6 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 7e-55 216 Os04g0623600 AK068129.1 - (S)-2-hydroxy-acid oxidase, peroxisomal (EC1.1.3.15) (Glycolate oxidase) (GOX) (Short chainalpha-hydroxy acid oxidase) 4e-6 At4g18360 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.44 2e-45 184 Os07g0152900 AK062433.1 - - 2e-11 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.41 1e-40 169 Os03g0786100 CB683246 - Glycolate oxidase (EC 1.1.3.15) (Fragment) 2e-41 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.10 1e-7 59 Os08g0198700 AK060371.1 - Glycolate oxidase (EC 1.1.3.15) (Fragment) 2e-13 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 7e-29 129 Arabidopsis thaliana At3g14420 820665 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative F:glycolate oxidase activity;P:metabolic process;C:in 7 components;OBFMPA - - - C.G. S.X.
0.25 2e-17 91 Glycine max GmaAffx.74224.1.S1_at BQ629600 peroxisomal glycolate oxidase - 5e-18 At4g18360 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.65 0 884 Hordeum vulgare Contig8976_at Contig8976 - - 1e-20 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.23 9e-26 119 Populus trichocarpa Ptp.6667.1.S1_s_at CX185361 hypothetical protein - 9e-108 At3g14415 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.60 0 779 Triticum aestivum Ta.10548.1.S1_at CD908152 - - 5e-5 At3g14415 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.34 2e-50 198 Vitis vinifera 1622249_at CA817903 glycolate oxidase-like - 6e-153 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.63 0 989 Zea mays Zm.2298.2.A1_a_at BQ619139 hypothetical protein LOC100192687 - 1e-21 At3g14420 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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