Gene omics information

Query gene ID	Os04g0623200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	51.1	Os04g0623200	AK105231.1	-	Conserved hypothetical protein	4e-1	At4g29230	anac075 (Arabidopsis NAC domain containing protein 75)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os06g0149100	AK099064.1	-	Lipolytic enzyme, G-D-S-L family protein	3e+0	At5g22810	GDSL-motif lipase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os04g0305700	AK068128.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e-1	At2g43010	PIF4 (phytochrome interacting factor 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os01g0106300	AK119550.1	-	Isoflavone reductase homolog IRL (EC 1.3.1.-)	6e-1	At2g34200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os02g0646500	AF148877.1	-	Aldehyde dehydrogenase domain containing protein	4e+0	At5g01830	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.30	32.7	Os02g0589400	9630.m03609	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e-2	At5g47080	CKB1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.8	98.9	GSM421685	XOC, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
15.7	98.7	GSM421725	MOCK, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
15.7	98.7	GSM421684	XOC, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
15.0	98.6	GSM421705	XOO, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.3	98.6	GSM421724	MOCK, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.3	98.6	GSM421674	XOC, 4 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.4	98.5	GSM421714	MOCK, 4 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.5	98.2	GSM421683	XOC, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.1	98.0	GSM421704	XOO, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.2	97.7	GSM174887	D FR13 3 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	40	Os09g0260101	9637.m00627	-	-	2e+0	At1g02620	GTP-binding protein (SAR1A)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	3e-3	44	Os01g0221900	NM_188509.1	-	Conserved hypothetical protein	2e+0	At3g42990	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-5	52	Os04g0128700	AK107172.1	-	Conserved hypothetical protein	2e-1	At1g19950	HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H))	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-2	42	Os01g0267800	9629.m01616	-	Protein kinase domain containing protein	1e-2	At1g20900	ESC (ESCAROLA)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-2	42	Os03g0756000	AK106078.1	-	60S ribosomal protein L13a	6e-7	At5g48760	60S ribosomal protein L13A (RPL13aD)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	5e-2	40	Os02g0286000	9630.m01745	-	-	1e-2	At1g68920	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At4g29230	829044	anac075 (Arabidopsis NAC domain containing protein 75)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOFBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-1	36	Glycine max	PsAffx.CL1077Contig1_at	PsAffx.CL1077Contig1	-	-	2e+0	At5g56840	DNA-binding family protein	C.G.	S.X.	Please select
0.03	1e-2	40	Hordeum vulgare	Contig14416_at	Contig14416	-	-	5e+0	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.04	1e-1	38	Populus trichocarpa	PtpAffx.128067.1.A1_at	CV232563	hypothetical protein	-	8e-1	At4g27740	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	TaAffx.112579.1.S1_at	CA618137	-	-	4e+0	At5g01820	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1619645_at	CF202342.1	-	-	2e-1	At2g35850	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	Zm.7707.1.S1_a_at	CK985938	Hypothetical protein LOC100193555	-	1e-2	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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