CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0620500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0620500 CB667511 - Hypothetical protein 2e-2 At1g30470 SIT4 phosphatase-associated family protein S.X. H.G.
0.73 91.1 Os12g0556400 AK062903.1 - Conserved hypothetical protein 2e-5 At1g16000 unknown protein S.X. H.G.
0.47 62.3 Os09g0415800 AK071371.1 - Phosphofructokinase family protein 5e-18 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) S.X. H.G.
0.40 51.1 Os03g0253800 AK120111.1 - Hypothetical protein 9e-8 At4g00026 - S.X. H.G.
0.32 36.3 Os01g0496900 AK069894.1 - P-type trefoil domain containing protein 2e-39 At3g16200 unknown protein S.X. H.G.
0.27 27.5 Os09g0551300 AK066732.1 - 16S rRNA m5C967 methyltransferase domaincontaining protein 1e-6 At5g55920 nucleolar protein, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.5 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 5670 Os04g0620400 AK066330.1 - SIT4 phosphatase-associated protein family protein 2e-2 At1g30470 SIT4 phosphatase-associated family protein C.G. S.X.
0.28 4e-21 105 Os01g0585700 NM_192531.1 - SIT4 phosphatase-associated protein family protein 2e-17 At1g30470 SIT4 phosphatase-associated family protein C.G. S.X.
0.24 4e-33 145 Os05g0592500 AK099566.1 - SIT4 phosphatase-associated protein family protein 8e-24 At1g30470 SIT4 phosphatase-associated family protein C.G. S.X.
0.02 3e-3 44 Os02g0655600 AK101560.1 - Protein of unknown function DUF676 domaincontaining protein 6e-5 At5g51180 unknown protein C.G. S.X.
0.02 8e-1 36 Os10g0509100 AK069166.1 - Conserved hypothetical protein 3e-5 At5g24610 unknown protein C.G. S.X.
0.01 3e-3 46 Os01g0822800 AK065060.1 - Zn-finger, RING domain containing protein 2e-1 At5g01880 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 1e-2 44 Os05g0100700 AK110818.1 - Somatic embryogenesis receptor kinase-like protein 1e-9 At1g26150 PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10) C.G. S.X.
0.01 2e-1 38 Os03g0860900 AK111575.1 - Lissencephaly type-1-like homology motif domaincontaining protein 4e-1 At2g32700 WD-40 repeat family protein C.G. S.X.
0.01 8e-1 36 Os02g0266200 AK103371.1 - TPR-like domain containing protein 3e-11 At3g16010 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 8e-1 36 Os06g0614100 AK119909.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e-1 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-2 42 Arabidopsis thaliana At1g30470 839926 SIT4 phosphatase-associated family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;BMOFPVA - - - C.G. S.X.
0.04 1e-7 59 Glycine max GmaAffx.64338.2.S1_at BE475311 - - 6e-33 At1g30470 SIT4 phosphatase-associated family protein C.G. S.X.
0.06 9e-19 95 Hordeum vulgare Contig6448_at Contig6448 - - 1e-2 At3g06000 leucine-rich repeat family protein C.G. S.X.
0.01 1e-1 40 Populus trichocarpa PtpAffx.223122.1.S1_at pmrna40960 - - 6e-1 At1g02380 unknown protein C.G. S.X.
0.25 2e-80 301 Triticum aestivum Ta.9253.1.S1_at CK197206 - - 7e-5 At1g30470 SIT4 phosphatase-associated family protein C.G. S.X.
0.12 5e-10 65 Vitis vinifera 1619715_at CF207152 hypothetical protein LOC100243011 - 5e-39 At1g30470 SIT4 phosphatase-associated family protein C.G. S.X.
0.13 2e-62 240 Zea mays Zm.11374.1.A1_at CB351123 - - 4e-15 At1g30470 SIT4 phosphatase-associated family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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