CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0617900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os04g0617900 AK109057.1 - Germin-like protein precursor 8e-3 At5g26700 germin-like protein, putative S.X. H.G.
0.54 71.9 Os06g0302000 AK106070.1 - Hypothetical protein 3e+0 At1g06475 unknown protein S.X. H.G.
0.50 68.0 Os11g0306400 AK106179.1 - O-methyltransferase, family 2 domain containingprotein 2e-1 At3g16190 isochorismatase hydrolase family protein S.X. H.G.
0.42 53.9 Os01g0307500 AK108663.1 - Cation transporter family protein 1e+0 At3g02670 proline-rich family protein S.X. H.G.
0.40 51.1 Os07g0643800 AK103858.1 - Plant disease resistance response protein familyprotein 1e-1 At1g01730 unknown protein S.X. H.G.
0.39 48.3 Os03g0306700 AK109929.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e-1 At2g27250 CLV3 (CLAVATA3) S.X. H.G.
0.35 41.7 Os04g0189012 9632.m00980 - - 2e+0 At5g13910 LEP (LEAFY PETIOLE) S.X. H.G.
0.32 36.3 Os10g0569600 BQ529575 - RIR1b protein precursor 1e+0 At2g25344 LCR14 (Low-molecular-weight cysteine-rich 14) S.X. H.G.
0.29 31.1 Os04g0208200 CB624786 - Cysteine proteinase 8e-2 At1g29090 peptidase C1A papain family protein S.X. H.G.
0.23 21.2 Os05g0515500 AK068905.1 - O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT) 7e-1 At1g53625 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
85.5 100.0 GSM262004 IAC165, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
63.7 99.9 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
56.4 99.9 GSM262012 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
43.1 99.9 GSM262001 IAC165, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
23.8 99.4 GSM262021 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
22.4 99.3 GSM262013 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
19.8 99.1 GSM262016 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
17.9 98.9 GSM262000 IAC165, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
16.9 98.8 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.8 98.6 GSM262005 IAC165, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 3e-12 73 Os01g0249200 AK061046.1 - Nectarin 1 precursor (EC 1.15.1.1) (Superoxidedismutase [Mn]) 9e-6 At1g02335 GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.) C.G. S.X.
0.17 4e-15 83 Os08g0189900 AF141879.1 - Oxalate oxidase-like protein or germin-likeprotein (Germin-like 8) (Germin-like 12) 1e-1 At5g38950 germin-like protein-related C.G. S.X.
0.17 2e-7 57 Os12g0154700 AK063013.1 - Germin family protein 5e-4 At3g05950 germin-like protein, putative C.G. S.X.
0.12 5e-8 59 Os01g0952000 AK099691.1 - Rhicadhesin receptor precursor (Germin-likeprotein) 2e-3 At3g62020 GLP10 (GERMIN-LIKE PROTEIN 10) C.G. S.X.
0.10 8e-10 65 Os05g0277500 AK105351.1 - Rhicadhesin receptor precursor (Germin-likeprotein) 1e-1 At1g09560 GLP5 (GERMIN-LIKE PROTEIN 5) C.G. S.X.
0.07 2e-7 57 Os02g0491700 9630.m02767 - Germin family protein 2e-7 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 8e-3 42 Arabidopsis thaliana At5g26700 832719 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOAM - - - C.G. S.X.
0.04 3e-3 44 Glycine max PsAffx.CL2553Contig1_at PsAffx.CL2553Contig1 - - 1e+0 At5g25240 - C.G. S.X.
0.17 4e-9 61 Hordeum vulgare Contig3151_at Contig3151 - - 2e-3 At5g39190 GER2 (GERMIN-LIKE PROTEIN 2) C.G. S.X.
0.11 3e-3 44 Populus trichocarpa PtpAffx.216683.1.S1_s_at pmrna31628 hypothetical protein - 3e-6 At5g38950 germin-like protein-related C.G. S.X.
0.10 9e-12 71 Triticum aestivum Ta.14461.2.S1_at CA604194 - - 2e-11 At3g62020 GLP10 (GERMIN-LIKE PROTEIN 10) C.G. S.X.
0.02 9e+0 30 Vitis vinifera 1622749_at CD715377 hypothetical protein LOC100253671 - 8e-1 At5g09978 PEP7 (ELICITOR PEPTIDE 7 PRECURSOR) C.G. S.X.
0.15 5e-2 38 Zea mays Zm.11238.1.A1_at BM340814 - - 5e-3 At5g39100 GLP6 (GERMIN-LIKE PROTEIN 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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