CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0613000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 96.4 Os04g0613000 AY323915.1 - Zinc transporter 1 precursor (ZRT/IRT-like protein1) 1e-2 At2g32270 ZIP3 S.X. H.G.
0.44 58.1 Os10g0524600 AK069238.1 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 8e-2 At4g00230 XSP1 (xylem serine peptidase 1) S.X. H.G.
0.27 27.5 Os02g0756100 AK060615.1 - Conserved hypothetical protein 2e+0 At3g12140 emsy N terminus domain-containing protein / ENT domain-containing protein S.X. H.G.
0.17 12.6 Os04g0671900 AK071455.1 - Auxin response factor 8 3e-45 At1g30330 ARF6 (AUXIN RESPONSE FACTOR 6) S.X. H.G.
0.13 8.2 Os09g0456100 AK072474.1 - Remorin, C-terminal region domain containingprotein 4e-1 At4g24430 lyase S.X. H.G.
0.11 6.5 Os05g0441400 AK108756.1 - Uncharacterized plant-specific domain containingprotein 2e+0 At2g31035 - S.X. H.G.
0.04 2.0 Os11g0308800 AK068828.1 - Protein kinase-like domain containing protein 5e-1 At3g56800 CAM3 (CALMODULIN 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.7 99.8 GSM154959 Leaf_OsRR6-overexpressor_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
22.8 99.3 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
22.0 99.3 GSM154960 Leaf_OsRR6-overexpressor_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
14.2 98.5 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
10.2 98.0 GSM99861 TCHW P4_m103 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
9.2 97.9 GSM409434 9311_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.5 97.7 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
8.3 97.7 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
8.2 97.7 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
7.9 97.6 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 3e-32 141 Os08g0207500 AK105258.1 - Zinc transporter 1 precursor (ZRT/IRT-like protein1) 6e-2 At4g19680 IRT2 C.G. S.X.
0.01 4e-1 38 Os06g0224200 AK067986.1 - Glutaredoxin domain containing protein 9e-2 At4g08550 electron carrier/ protein disulfide oxidoreductase C.G. S.X.
0.01 4e-1 38 Os11g0310800 AK101122.1 - Helicase-associated region domain containingprotein 2e-11 At1g27900 RNA helicase, putative C.G. S.X.
0.01 2e+0 36 Os02g0208600 AK105113.1 - The stop codon is not identified. 2e-15 At3g25840 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-2 42 Arabidopsis thaliana At2g32270 817787 ZIP3 A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency. - - - C.G. S.X.
0.02 4e+0 34 Glycine max Gma.8964.1.S1_at BU765449 - - 1e+1 At5g36662 - C.G. S.X.
0.33 1e-124 446 Hordeum vulgare Contig26252_at Contig26252 - - 1e+0 At4g19680 IRT2 C.G. S.X.
0.04 3e-1 38 Populus trichocarpa PtpAffx.209197.1.S1_at pmrna18189 ZIP transporter - 5e-1 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.45 5e-67 256 Triticum aestivum TaAffx.106421.1.S1_at CD933478 zinc transporter ZIP - 3e+0 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.08 1e-2 40 Vitis vinifera 1618682_at CA814693 hypothetical protein LOC100255284 - 5e-5 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.01 5e+0 32 Zea mays Zm.6247.1.S1_at AF371267.1 alpha zein 19kDa D1 - 5e-1 At5g62360 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006829 The directed movement of zinc (Zn) ions into, out of, within or between cells.
S GO:0010043 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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