CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0605500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 51.1 Os04g0605500 AK120057.1 - Calcium-transporting ATPase 8, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8) 3e-30 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) S.X. H.G.
0.44 58.1 Os05g0537400 CF304349 - Protein phosphatase 2C 1e-2 At5g10740 protein phosphatase 2C-related / PP2C-related S.X. H.G.
0.29 31.1 Os01g0583100 CA757691 - Protein phosphatase 2C ABI2 (EC 3.1.3.16) (PP2C)(Abscisic acid- insensitive 2) 2e-6 At1g72770 HAB1 (HOMOLOGY TO ABI1) S.X. H.G.
0.13 8.2 Os01g0151600 AK063435.1 - Conserved hypothetical protein 9e-10 At5g59960 unknown protein S.X. H.G.
0.09 4.9 Os02g0766700 AK072062.1 - Abscisic acid responsive elements-binding factor(ABA-responsive element binding protein 2) (AREB2) 6e-5 At2g36270 ABI5 (ABA INSENSITIVE 5) S.X. H.G.
0.06 3.0 Os11g0177400 AK120669.1 - ABC transporter related domain containing protein 4e+0 At4g03180 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.9 99.0 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
17.5 98.9 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
17.0 98.8 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
16.6 98.8 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
14.3 98.6 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.0 97.8 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
6.4 97.2 GSM159266 Salt stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
6.3 97.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
6.1 97.1 GSM278849 WuYun3-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
6.0 97.0 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-23 113 Os02g0176700 9630.m00757 - Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9) 4e-47 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.12 6e-36 155 Os08g0517200 AK058787.1 - Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9) 1e-39 At4g29900 ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) C.G. S.X.
0.07 4e-9 65 Os03g0616400 AK071938.1 - Plasma membrane Ca2+-ATPase 4e-26 At2g22950 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) C.G. S.X.
0.03 4e-6 56 Os12g0586600 AK100436.1 - Plasma membrane Ca2+-ATPase 2e-59 At2g22950 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) C.G. S.X.
0.01 4e-3 46 Os01g0939100 AK070064.1 - Calmodulin-stimulated calcium-ATPase 2e-16 At3g57330 ACA11 (autoinhibited Ca2+-ATPase 11) C.G. S.X.
0.01 4e-3 46 Os03g0203700 AK121250.1 - Plasma membrane Ca2+-ATPase 1e-63 At4g37640 ACA2 (CALCIUM ATPASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-30 135 Arabidopsis thaliana At3g21180 821671 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain. - - - C.G. S.X.
0.14 6e-23 111 Glycine max Gma.3527.1.S1_at AW733755 - - 7e-69 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.54 0 987 Hordeum vulgare Contig6173_at Contig6173 - - 2e-36 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.26 1e-42 176 Populus trichocarpa PtpAffx.209467.1.S1_at pmrna18776 autoinhibited calcium ATPase - 6e-136 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.44 7e-179 628 Triticum aestivum Ta.4760.1.S1_x_at CD936415 - - 3e-32 At3g21180 ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) C.G. S.X.
0.07 3e-9 63 Vitis vinifera 1613557_at BM436858 - - 4e-66 At4g37640 ACA2 (CALCIUM ATPASE 2) C.G. S.X.
0.18 1e-95 351 Zea mays Zm.7379.1.A1_at CD435322 - - 4e-2 At3g22910 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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