CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0602100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0602100 AK121197.1 - Haem peroxidase, plant/fungal/bacterial familyprotein 2e-10 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) S.X. H.G.
0.63 82.7 Os09g0517000 AK067677.1 - Conserved hypothetical protein 3e-2 At4g18205 - S.X. H.G.
0.55 73.7 Os02g0834700 AK061331.1 - Conserved hypothetical protein YfcH family protein 1e-8 At2g21280 SULA S.X. H.G.
0.47 62.3 Os08g0382400 AK099874.1 - Peptidyl-prolyl cis-trans isomerase, chloroplastprecursor (EC 5.2.1.8) (40 kDa thylakoid lumen PPIase)(40 kDa thylakoid lumen rotamase) 4e-18 At3g01480 CYP38 (cyclophilin 38) S.X. H.G.
0.31 34.5 Os07g0469100 AK120365.1 - Thylakoid membrane phosphoprotein 14 kDa,chloroplast precursor 7e+0 At5g25240 - S.X. H.G.
0.29 31.1 Os02g0553200 AB114856.1 - Thylakoid-bound ascorbate peroxidase 2e-20 At1g77490 TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.0 98.3 GSM421694 XOO, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.9 98.1 GSM174890 G mock 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
9.0 97.8 GSM421674 XOC, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.9 97.8 GSM421690 XOO, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.1 97.7 GSM174884 E mock 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
8.0 97.6 GSM421670 XOC, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.7 97.6 GSM421710 MOCK, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.6 97.5 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
7.6 97.5 GSM421714 MOCK, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.7 97.3 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-3 46 Os01g0264400 NM_187993.1 - Conserved hypothetical protein 2e-4 At3g10040 transcription factor C.G. S.X.
0.01 6e-3 44 Os04g0430000 AK100142.1 - Ser Thr specific protein kinase-like protein 7e-8 At4g01330 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.01 6e-3 44 Os07g0608800 AK059637.1 - Peroxisome assembly protein 10 (Peroxin-10)(AthPEX10) (Pex10p) (PER8) 3e-6 At2g26350 PEX10 C.G. S.X.
0.01 6e-3 44 Os07g0608900 AK068639.1 - Peroxisome assembly protein 10 (Peroxin-10)(AthPEX10) (Pex10p) (PER8) 3e+0 At5g49400 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.01 6e-3 44 Os07g0639400 AK110555.1 - Peroxidase 1 7e-4 At4g36430 peroxidase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-10 67 Arabidopsis thaliana At4g09010 826480 APX4 (ASCORBATE PEROXIDASE 4) Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. - - - C.G. S.X.
0.07 8e-8 59 Glycine max Gma.2202.1.S1_at CD404038 - - 1e-30 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) C.G. S.X.
0.32 2e-43 176 Hordeum vulgare Contig8515_s_at Contig8515 - - 8e-2 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) C.G. S.X.
0.10 1e-12 75 Populus trichocarpa Ptp.6829.1.S1_at DN500911 hypothetical protein - 4e-21 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) C.G. S.X.
0.48 3e-93 343 Triticum aestivum Ta.488.1.S1_at BG909285 - - 3e+0 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) C.G. S.X.
0.05 1e-3 44 Vitis vinifera 1618209_at CF373021 - - 3e-17 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) C.G. S.X.
0.02 9e-2 38 Zea mays Zm.19059.1.A1_at CO521551 hypothetical protein LOC100193008 - 4e-1 At1g78170 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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