CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0601800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0601800 AK062641.1 - Plastid protein 3e-45 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) S.X. H.G.
0.50 68.0 Os03g0736400 AK105812.1 - Conserved hypothetical protein 95 family protein 1e-24 At3g28460 unknown protein S.X. H.G.
0.46 60.9 Os03g0633900 AK059181.1 - Single-strand binding protein/Primosomalreplication protein n family protein 2e-7 At1g47720 OSB1 (Organellar Single-stranded) S.X. H.G.
0.46 60.9 Os04g0692200 AK071726.1 - Conserved hypothetical protein 1e-2 At3g17160 unknown protein S.X. H.G.
0.40 51.1 Os03g0656900 AK066416.1 - NusB/RsmB/TIM44 domain containing protein 3e-9 At4g26370 antitermination NusB domain-containing protein S.X. H.G.
0.38 46.9 Os01g0617900 AK109342.2 - Conserved hypothetical protein 3e-9 At5g11450 oxygen-evolving complex-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.4 98.2 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.8 98.1 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.6 98.1 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.6 98.1 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.5 98.1 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.2 98.0 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.2 98.0 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.1 98.0 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
9.6 97.9 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
7.3 97.5 GSM421695 XOO, 8 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 2e-54 214 Os06g0116600 CR278699 - Proteinase inhibitor, propeptide domain containingprotein 3e-8 At2g35240 plastid developmental protein DAG, putative C.G. S.X.
0.12 4e-111 402 Os04g0601600 9632.m04953 - - 4e-19 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) C.G. S.X.
0.10 4e-9 63 Os03g0581600 BQ906717 - DAG protein, chloroplast precursor 8e-5 At1g11430 plastid developmental protein DAG, putative C.G. S.X.
0.08 2e-4 48 Os08g0139100 AK099590.1 - DAG protein, chloroplast precursor 7e-44 At1g11430 plastid developmental protein DAG, putative C.G. S.X.
0.07 6e-5 50 Os09g0132600 AK072233.1 - Conserved hypothetical protein 2e-26 At3g15000 - C.G. S.X.
0.07 1e-3 46 Os11g0216400 CB679774 - Proteinase inhibitor, propeptide domain containingprotein 2e-1 At4g20020 unknown protein C.G. S.X.
0.03 4e-3 44 Os07g0154300 AK105386.1 - - 1e+0 At5g44610 MAP18 (Microtubule-associated Protein 18) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 3e-45 182 Arabidopsis thaliana At2g33430 817907 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) F:molecular_function unknown;P:plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA);C:chloroplast;P - - - C.G. S.X.
0.33 3e-83 309 Glycine max Gma.8154.1.S1_at AW310537 - - 5e-35 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) C.G. S.X.
0.51 7e-165 579 Hordeum vulgare Contig24791_at Contig24791 - - 2e-39 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) C.G. S.X.
0.25 2e-28 127 Populus trichocarpa PtpAffx.32368.2.A1_at CV238018 hypothetical protein - 3e-49 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) C.G. S.X.
0.51 1e-177 623 Triticum aestivum Ta.23199.1.S1_at CA634433 - - 2e-43 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) C.G. S.X.
0.39 3e-67 254 Vitis vinifera 1608717_at CF568867 - - 2e-63 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) C.G. S.X.
0.46 2e-131 468 Zea mays Zm.10076.1.S1_at BM379471 DAG protein - 9e-15 At1g32580 plastid developmental protein DAG, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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