CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0590400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os04g0590400 AK100784.1 - GRAS transcription factor domain containingprotein 6e-6 At1g07520 scarecrow transcription factor family protein S.X. H.G.
0.44 58.1 Os06g0251200 AK067034.1 - MATH domain containing protein 1e+0 At5g46530 - S.X. H.G.
0.43 55.4 Os01g0347100 CA763426 - Protein of unknown function DUF1399 family protein 5e-3 At1g56230 unknown protein S.X. H.G.
0.36 44.0 Os02g0150700 AK120070.1 - Zn-finger, RING domain containing protein 5e-3 At5g10650 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.13 8.2 Os04g0692800 AK103159.1 - Conserved hypothetical protein 9e-1 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) S.X. H.G.
0.12 7.2 Os12g0641100 AK100537.1 - Sodium/hydrogen exchanger family protein 8e-2 At1g14660 ATNHX8 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.3 97.7 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.7 97.6 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
7.6 97.5 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.8 97.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM431932 Root- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.7 96.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-5 52 Os12g0573200 AK121943.1 - GRAS transcription factor domain containingprotein 1e-4 At2g37650 scarecrow-like transcription factor 9 (SCL9) C.G. S.X.
0.03 7e-4 48 Os03g0690600 AK101402.1 - SCARECROW-like protein 3e-2 At2g37650 scarecrow-like transcription factor 9 (SCL9) C.G. S.X.
0.01 7e-4 48 Os11g0705900 AK063519.1 - GRAS transcription factor domain containingprotein 3e-1 At3g18420 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.01 1e-2 44 Os01g0842200 AK119896.1 - Scarecrow-like 9 (Fragment) 3e-5 At2g37650 scarecrow-like transcription factor 9 (SCL9) C.G. S.X.
0.01 2e-1 40 Os10g0350400 NM_195939.1 - Ribosomal protein S12/S23 family protein 7e+0 At5g08060 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-6 54 Arabidopsis thaliana At1g07520 837266 scarecrow transcription factor family protein F:transcription factor activity;P:response to chitin;C:cellular_component unknown;PBOM - - - C.G. S.X.
0.02 5e-4 48 Glycine max GmaAffx.52839.1.S1_at BU578142 - - 9e-1 At1g07520 scarecrow transcription factor family protein C.G. S.X.
0.05 2e-7 57 Hordeum vulgare Contig25692_at Contig25692 - - 1e-4 At2g37650 scarecrow-like transcription factor 9 (SCL9) C.G. S.X.
0.05 2e-3 46 Populus trichocarpa PtpAffx.200782.1.S1_at pmrna1513 GRAS family transcription factor - 6e-7 At3g46600 scarecrow transcription factor family protein C.G. S.X.
0.14 3e-32 141 Triticum aestivum Ta.23691.1.A1_at CD881270 - - 8e-6 At3g46600 scarecrow transcription factor family protein C.G. S.X.
0.05 6e-6 52 Vitis vinifera 1612489_at CD717610 - - 9e-2 At4g17230 SCL13 (Scarecrow-like 13) C.G. S.X.
0.14 7e-22 105 Zea mays Zm.10558.1.A1_at BM378271 - - 3e-4 At3g46600 scarecrow transcription factor family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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