CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0589600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os04g0589600 AK061833.1 - Glycosyl transferase, group 1 domain containingprotein 6e-14 At1g78800 glycosyl transferase family 1 protein S.X. H.G.
0.50 68.0 Os12g0595000 AK065252.1 - EXS, C-terminal domain containing protein 3e-13 At5g35730 EXS family protein / ERD1/XPR1/SYG1 family protein S.X. H.G.
0.31 34.5 Os02g0736500 AK065166.1 - Conserved hypothetical protein 3e-1 At4g25740 40S ribosomal protein S10 (RPS10A) S.X. H.G.
0.27 27.5 Os04g0600800 9632.m04940 - Conserved hypothetical protein 1e-25 At4g27630 GTG2 (GPCR-TYPE G PROTEIN 2) S.X. H.G.
0.26 25.6 Os05g0436400 AK120229.1 - Peptidase A22B, minor histocompatibility antigenH13 family protein 2e-32 At2g03120 ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) S.X. H.G.
0.15 10.3 Os04g0195000 AK073992.1 - Vacuolar assembly protein VPS41 homolog 2e-24 At1g08190 vacuolar assembly protein, putative (VPS41) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 96.3 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
4.3 96.1 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
3.6 95.5 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.4 95.2 GSM262000 IAC165, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.3 95.1 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
3.0 94.6 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
2.9 94.5 GSM261998 IAC165, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.8 94.3 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
2.8 94.3 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
2.7 94.1 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-3 44 Os01g0144200 AK059740.1 - Conserved hypothetical protein 7e-25 At2g37680 - C.G. S.X.
0.02 4e-1 38 Os03g0128000 AK062278.1 - Beta-Ig-H3/fasciclin domain containing protein 5e+0 At5g28060 40S ribosomal protein S24 (RPS24B) C.G. S.X.
0.01 1e-1 40 Os08g0484400 AK065727.1 - Bacterial Fmu (Sun)/eukaryotic nucleolarNOL1/Nop2p domain containing protein 4e-10 At2g22400 NOL1/NOP2/sun family protein C.G. S.X.
0.01 4e-1 38 Os04g0278000 AK120988.1 - PRLI-interacting factor G (Fragment) 3e-1 At3g61900 auxin-responsive family protein C.G. S.X.
0.01 4e-1 38 Os07g0250100 NM_186851.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-1 At1g18400 BEE1 (BR Enhanced Expression 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 6e-14 79 Arabidopsis thaliana At1g78800 844216 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMF - - - C.G. S.X.
0.10 5e-12 73 Glycine max GmaAffx.87209.1.S1_at BM188305 - - 4e-28 At1g78800 glycosyl transferase family 1 protein C.G. S.X.
0.40 8e-132 470 Hordeum vulgare Contig12074_at Contig12074 - - 2e-9 At1g78800 glycosyl transferase family 1 protein C.G. S.X.
0.10 3e-4 48 Populus trichocarpa PtpAffx.216530.1.S1_at pmrna31366 - - 4e-11 At1g78800 glycosyl transferase family 1 protein C.G. S.X.
0.14 2e-47 190 Triticum aestivum TaAffx.12446.1.S1_at CA649756 - - 1e-9 At1g78800 glycosyl transferase family 1 protein C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1618855_at CF203870.1 - - 1e+0 At3g21371 unknown protein C.G. S.X.
0.01 1e+0 34 Zea mays Zm.584.3.S1_a_at M73029.1 pericarp color1 - 3e-8 At4g38620 MYB4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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