Gene omics information

Query gene ID Os04g0584600
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6181.2Os04g0584600AB042550.1-Calcium dependent protein kinase3e-44At2g17290CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)S.X.H.G.
0.7793.1Os01g0261200AB028187.1-No apical meristem (NAM) protein domain containingprotein7e-5At3g10490anac052 (Arabidopsis NAC domain containing protein 52)S.X.H.G.
0.6079.7Os01g0672400AK064817.1-Drought induced 19 family protein3e-1At4g32090galactosyltransferaseS.X.H.G.
0.5676.3Os01g0908700AK120427.1-Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A))2e-17At1g67800copine-relatedS.X.H.G.
0.5676.3Os05g0473500AK101630.1-Exo70 exocyst complex subunit family protein5e+0At2g48130protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinS.X.H.G.
0.5371.3Os01g0748900AK071946.1-Membrane attack complexcomponent/perforin/complement C9 family protein3e-4At1g29690CAD1 (constitutively activated cell death 1)S.X.H.G.
0.4458.1Os01g0814400AK069730.1-Hypothetical protein2e-2At2g37480unknown proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.797.8GSM159181Mature leaf, biological rep 2GSE6893Expression data for reproductive development in rice
8.497.7GSM159180Mature leaf, biological rep 1GSE6893Expression data for reproductive development in rice
6.397.2GSM173086Rice MH63 Control1GSE7197Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
6.397.2GSM173080Rice MH63 Control2GSE7197Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.596.8GSM173093Rice OsSRT1 RNAi transgenic line LM2GSE7197Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.596.8GSM154945Leaf_DMSO-treatment_30min_replicate 1GSE6719Cytokinin responsive genes in rice
5.496.8GSM173089Rice MH63 Control3GSE7197Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.396.7GSM154947Leaf_DMSO-treatment_30min_replicate 3GSE6719Cytokinin responsive genes in rice
5.296.7GSM159182Mature leaf, biological rep 3GSE6893Expression data for reproductive development in rice
5.196.6GSM154951Leaf_DMSO-treatment_120min_replicate 1GSE6719Cytokinin responsive genes in rice
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.5501241Os02g0685900C22384-Calcium dependent protein kinase1e-16At4g38230CPK26C.G.S.X.
0.226e-30133Os02g0831900AK109754.1-Conserved hypothetical protein2e-1At5g04870CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)C.G.S.X.
0.226e-30133Os02g0832000AK069127.1--2e-2At4g38230CPK26C.G.S.X.
0.223e-27125Os03g0128700AF048691.1-Calcium-dependent protein kinase, isoform 11 (EC2.7.1.-) (CDPK 11)1e-16At2g17290CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.215e-26121Os12g01698009640.m00650-Calcium-dependent protein kinase SK5 (EC 2.7.1.-)(CDPK)2e-8At4g09570CPK4C.G.S.X.
0.198e-31137Os03g07890009631.m05646-Calmodulin-domain protein kinase CDPK isoform 2(Calmodulin-domain protein kinase CDPK isoform 213089-15758) (Calcium-dependent protein kinase isoform 2)7e-20At5g04870CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)C.G.S.X.
0.171e-24115Os07g0161600AK068414.1-Calmodulin-domain protein kinase CDPK isoform 2(Calmodulin-domain protein kinase CDPK isoform 213089-15758) (Calcium-dependent protein kinase isoform 2)1e-9At5g04870CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)C.G.S.X.
0.166e-30133Os03g0788500AK072204.1-Calcium-dependent protein kinase 28e-30At3g10660CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2)C.G.S.X.
0.115e-24113Os11g0171500AY144497.1-Calcium-dependent protein kinase SK5 (EC 2.7.1.-)(CDPK)1e-9At1g35670ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.293e-44180Arabidopsis thalianaAt2g17290816235CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK3 is also a member of the Arabidopsis CDPK family.---C.G.S.X.
0.231e-41173Glycine maxGma.2566.1.S1_atBE820790--4e-70At2g17290CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.6601840Hordeum vulgareContig4589_atContig4589--6e-30At2g17290CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.161e-1069Populus trichocarpaPtpAffx.212106.1.S1_atpmrna23742calcium dependent protein kinase 12-5e-33At5g23580CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)C.G.S.X.
0.6101798Triticum aestivumTa.6301.1.S1_atCA654806Calcium-dependent protein kinase 2-1e-40At4g38230CPK26C.G.S.X.
0.112e-654Vitis vinifera1621772_atCD005226hypothetical protein LOC100253693-7e-20At2g17290CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.6201635Zea maysZm.39.1.S1_atD87042.1Calcium-dependent protein kinase-1e-25At4g35310CPK5 (calmodulin-domain protein kinase 5)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage