CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0580400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0580400 AK121581.1 - The start codon is not identified. 4e-1 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) S.X. H.G.
0.33 38.8 Os05g0120900 AK121904.1 - Conserved hypothetical protein 4e-2 At3g42800 unknown protein S.X. H.G.
0.22 19.4 Os02g0752300 AK072544.1 - Conserved hypothetical protein 1e-2 At3g50550 unknown protein S.X. H.G.
0.07 3.7 Os05g0489800 AY438639.1 - Histone H3.2 3e-5 At4g40040 histone H3.2 S.X. H.G.
0.04 2.0 Os04g0228100 AK059410.1 - Conserved hypothetical protein 3e-6 At4g02800 unknown protein S.X. H.G.
0.03 1.4 Os10g0177400 CR280915 - Pathogenicity protein PATH531-like protein 4e+0 At2g44000 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.3 99.9 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
25.4 99.5 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
21.1 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.5 98.9 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
11.8 98.3 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
10.6 98.1 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
10.2 98.0 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
9.8 98.0 GSM409434 9311_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
9.6 97.9 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.4 97.7 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 4e-12 73 Os03g0123100 AK062161.1 - SUMO E2 conjugating enzyme SCE1 6e-19 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) C.G. S.X.
0.02 2e-1 38 Os04g0682600 AK062587.1 - Integrase, catalytic region domain containingprotein 2e-1 At5g15853 unknown protein C.G. S.X.
0.02 4e+0 34 Os09g0342000 AK111440.1 - Cyclin-like F-box domain containing protein 3e+0 At1g27970 NTF2B (NUCLEAR TRANSPORT FACTOR 2B) C.G. S.X.
0.02 4e+0 34 Os11g0574600 9639.m03306 - - 5e+0 At4g19645 - C.G. S.X.
0.01 6e-2 40 Os07g0485000 AK070085.1 - Trehalose-6-phosphate phosphatase 3e-2 At4g12430 trehalose-6-phosphate phosphatase, putative C.G. S.X.
0.01 4e+0 34 Os06g0643700 BX928901 - Hly-III related proteins family protein 2e+0 At5g20270 HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At3g57870 824956 SCE1 (SUMO CONJUGATION ENZYME 1) Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name. - - - C.G. S.X.
0.08 4e-5 50 Glycine max GmaAffx.90199.1.A1_s_at CF806975 - - 1e-44 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) C.G. S.X.
0.40 8e-69 260 Hordeum vulgare Contig13900_at Contig13900 - - 2e+0 At1g13080 CYP71B2 (CYTOCHROME P450 71B2) C.G. S.X.
0.07 6e-1 36 Populus trichocarpa Ptp.5276.2.S1_at CN523645 hypothetical protein - 1e-22 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) C.G. S.X.
0.40 6e-65 248 Triticum aestivum Ta.25386.1.S1_at CD454310 - - 7e+0 At5g47080 CKB1 C.G. S.X.
0.03 1e-4 46 Vitis vinifera 1618567_at CF202852.1 - - 2e-40 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) C.G. S.X.
0.17 1e-20 99 Zea mays Zm.5900.1.A1_at AI665136 - - 9e-2 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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