CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0566400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os04g0566400 CB669008 - Zn-finger, C2H2 type domain containing protein 9e-30 At1g14580 zinc finger (C2H2 type) family protein S.X. H.G.
0.35 41.7 Os01g0107900 AK070363.1 - Hypothetical protein 2e-2 At1g27510 - S.X. H.G.
0.32 36.3 Os02g0793900 AK102581.1 - Conserved hypothetical protein 4e-11 At1g80940 unknown protein S.X. H.G.
0.29 31.1 Os03g0822200 AK069405.1 - Conserved hypothetical protein 7e-16 At5g02240 binding / catalytic/ coenzyme binding S.X. H.G.
0.27 27.5 Os04g0534500 AK105805.1 - Conserved hypothetical protein 3e+0 At5g14550 unknown protein S.X. H.G.
0.26 25.6 Os02g0125100 AK101889.1 - Cis-homoaconitase family protein 1e-24 At4g13430 IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1) S.X. H.G.
0.25 24.1 Os04g0467700 AK101835.1 - Indole-3-glycerol phosphate synthase, chloroplastprecursor (EC 4.1.1.48) (IGPS) 1e-11 At5g48220 indole-3-glycerol phosphate synthase, putative S.X. H.G.
0.17 12.6 Os10g0415600 AK066606.1 - Acylamino acid-releasing enzyme 4e-1 At4g14570 acylaminoacyl-peptidase-related S.X. H.G.
0.17 12.6 Os02g0830100 AK065077.1 - Oligopeptidase A 7e-24 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein S.X. H.G.
0.17 12.6 Os08g0562700 AK066773.1 - Aminopeptidase N 4e-44 At1g63770 peptidase M1 family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.8 98.6 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
13.5 98.5 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
7.5 97.5 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.0 97.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.0 96.6 GSM173093 Rice OsSRT1 RNAi transgenic line LM2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
4.9 96.5 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
4.6 96.3 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
4.6 96.3 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
4.4 96.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.2 96.0 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 0 753 Os02g0672100 AK120603.1 - Zn-finger, C2H2 type domain containing protein 7e-24 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
0.18 6e-165 583 Os08g0554400 AK101181.1 - Zn-finger, C2H2 type domain containing protein 4e-25 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
0.17 9e-152 539 Os09g0555700 AK061264.1 - Zn-finger, C2H2 type domain containing protein 2e-25 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 4e-4 48 Os02g0514700 9630.m02978 - Dihydrolipoamide succinyltransferase familyprotein 1e-11 At5g55070 2-oxoacid dehydrogenase family protein C.G. S.X.
0.01 4e-4 48 Os01g0859500 AK101338.1 - Ocs-element binding factor 3.2 3e-4 At5g07600 oleosin / glycine-rich protein C.G. S.X.
0.01 4e-4 48 Os06g0108900 AK101029.1 - Homeobox domain containing protein 1e-12 At5g41410 BEL1 (BELL 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 9e-30 133 Arabidopsis thaliana At1g14580 838020 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFB - - - C.G. S.X.
0.14 8e-25 117 Glycine max PsAffx.psHB034xB01f_at PsAffx.psHB034xB01f - - 3e-11 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
0.37 3e-83 309 Hordeum vulgare Contig6198_at Contig6198 - - 2e-1 At4g33660 unknown protein C.G. S.X.
0.06 3e-12 75 Populus trichocarpa PtpAffx.87589.1.S1_at AJ772522 hypothetical protein - 5e-40 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
0.34 2e-71 272 Triticum aestivum Ta.27020.1.S1_at CD891344 - - 3e+0 At3g63040 unknown protein C.G. S.X.
0.01 8e-3 42 Vitis vinifera 1613105_at CB002608 - - 2e+0 At5g19490 DNA binding / sequence-specific DNA binding C.G. S.X.
0.13 4e-36 153 Zea mays Zm.372.1.S1_at AF058757.1 indeterminate growth1 - 9e-7 At1g14580 zinc finger (C2H2 type) family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage