CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0561600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.9 Os04g0561600 AK068927.1 - Protein of unknown function DUF1014 family protein 6e-10 At1g16210 unknown protein S.X. H.G.
0.42 53.9 Os05g0455600 AK060152.1 - Prenylated rab acceptor PRA1 family protein 1e-2 At5g02040 PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1) S.X. H.G.
0.41 52.4 Os08g0127700 AK121348.1 - Conserved hypothetical protein 2e-48 At4g37120 SMP2 S.X. H.G.
0.39 48.3 Os01g0254900 AK068204.1 - Syntaxin 1e-5 At5g46860 VAM3 S.X. H.G.
0.39 48.3 Os06g0183900 AK102112.1 - Protein of unknown function DUF602 family protein 1e+1 Atmg00516 - S.X. H.G.
0.39 48.3 Os03g0861800 AK109388.2 - Cyclin-like F-box domain containing protein 1e-2 At5g66540 - S.X. H.G.
0.36 44.0 Os01g0857700 AK066959.1 - Cell cycle control protein cwf14 2e-19 At4g21110 G10 family protein S.X. H.G.
0.35 41.7 Os02g0184500 AK105238.1 - - 7e-4 At5g32440 - S.X. H.G.
0.35 41.7 Os03g0626800 AK112092.1 - - 2e-50 At5g55990 CBL2 (CALCINEURIN B-LIKE 2) S.X. H.G.
0.35 41.7 Os06g0152200 AB001886.1 - Salt-tolerance protein 7e-1 At5g45390 CLPP4 (CLP PROTEASE P4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.7 98.0 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
4.5 96.3 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
4.3 96.1 GSM154937 Root_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
4.2 96.0 GSM154833 Root_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
4.2 96.0 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
3.8 95.7 GSM304395 Control for the stable transgenic rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
3.8 95.7 GSM304394 Stable transgenic rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
3.7 95.6 GSM304397 Control for the stable transgenic rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
3.6 95.5 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
3.1 94.8 GSM159200 Inflorescence (P4, 10 - 15 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 3e-44 180 Os03g0131800 9631.m00310 - - 2e-5 At1g16210 unknown protein C.G. S.X.
0.02 2e-2 42 Os04g0644200 9632.m05360 - Integrase, catalytic region domain containingprotein 3e+0 At4g32714 SCRL25 (SCR-Like 25) C.G. S.X.
0.01 2e-2 42 Os09g0135400 AK103761.1 - - 6e-12 At1g62390 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 6e-10 65 Arabidopsis thaliana At1g16210 838189 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA - - - C.G. S.X.
0.14 2e-22 107 Glycine max Gma.17172.1.S1_at BM178445 - - 5e-15 At1g16210 unknown protein C.G. S.X.
0.55 1e-160 565 Hordeum vulgare Contig12098_at Contig12098 - - 2e-6 At1g16210 unknown protein C.G. S.X.
0.12 4e-21 103 Populus trichocarpa PtpAffx.16260.1.S1_at DN502874 hypothetical protein - 6e-16 At1g16210 unknown protein C.G. S.X.
0.47 1e-149 529 Triticum aestivum Ta.1955.1.S1_at BE471208 - - 2e-4 At1g16210 unknown protein C.G. S.X.
0.03 1e-2 40 Vitis vinifera 1611570_at CD800020 hypothetical protein LOC100257990 - 4e-3 At3g11460 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.42 2e-100 365 Zea mays Zm.4808.1.A1_at CK827550 - - 4e-8 At1g16210 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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