CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0558900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0558900 AK100861.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 6e-3 At5g59810 SBT5.4 S.X. H.G.
0.80 94.6 Os04g0456100 AK070866.1 - Hypothetical protein 6e+0 At5g60800 heavy-metal-associated domain-containing protein S.X. H.G.
0.67 87.2 Os06g0336500 AK072260.1 - CSLD2 (Fragment) 1e-10 At2g33100 ATCSLD1 S.X. H.G.
0.67 87.2 Os01g0939100 AK070064.1 - Calmodulin-stimulated calcium-ATPase 2e-16 At3g57330 ACA11 (autoinhibited Ca2+-ATPase 11) S.X. H.G.
0.60 79.7 Os05g0590100 AK072823.1 - Ubiquitin domain containing protein 8e-5 At2g46500 phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein S.X. H.G.
0.46 60.9 Os04g0101700 AK069225.1 - Engulfment and cell motility, ELM domaincontaining protein 4e-8 At1g03620 phagocytosis and cell motility protein ELMO1-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
263.1 100.0 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
16.3 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 1e-67 260 Os02g0665300 AB037371.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 1e-4 At5g59810 SBT5.4 C.G. S.X.
0.10 2e-10 69 Os04g0182300 9632.m00908 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 5e+0 At1g01900 SBTI1.1 C.G. S.X.
0.08 2e-7 59 Os04g0559000 9632.m04551 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 5e-3 At3g14067 subtilase family protein C.G. S.X.
0.03 2e-10 69 Os03g0158700 AK071242.1 - - 9e+0 At4g24060 Dof-type zinc finger domain-containing protein C.G. S.X.
0.03 5e-5 52 Os10g0394200 9638.m02152 - SBT1 protein (Subtilisin-like protease) 2e-11 At3g14067 subtilase family protein C.G. S.X.
0.02 2e-10 69 Os03g0158800 AK108516.1 - Hypothetical protein 2e+0 At3g59520 ATRBL13 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 13) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-3 44 Arabidopsis thaliana At5g59810 836102 SBT5.4 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOFAM - - - C.G. S.X.
0.01 1e-1 40 Glycine max PsAffx.C85000046_at PsAffx.C85000046 - - 6e+0 At3g43829 unknown protein C.G. S.X.
0.06 1e-2 42 Hordeum vulgare Contig12417_at Contig12417 - - 2e+0 At2g03630 unknown protein C.G. S.X.
0.01 1e-1 40 Populus trichocarpa PtpAffx.212084.1.S1_at pmrna23709 hypothetical protein - 7e-8 At4g21326 ATSBT3.12 (SUBTILASE 3.12) C.G. S.X.
0.11 1e-31 139 Triticum aestivum TaAffx.92856.1.S1_at BF202876 - - 4e-1 At2g05510 glycine-rich protein C.G. S.X.
0.01 6e+0 32 Vitis vinifera 1613511_at BQ796246 hypothetical protein LOC100251492 - 4e-1 At2g45630 oxidoreductase family protein C.G. S.X.
0.07 2e-6 54 Zea mays Zm.4432.1.A1_at CF626711 hypothetical protein LOC100274260 - 4e+0 At2g20570 GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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