CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0556900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.9 Os04g0556900 AK064112.1 - Conserved hypothetical protein 3e-2 At1g54215 proline-rich family protein S.X. H.G.
0.38 46.9 Os08g0499700 AK119271.1 - Conserved hypothetical protein 2e+0 At5g22860 serine carboxypeptidase S28 family protein S.X. H.G.
0.36 44.0 Os08g0326500 AK109514.1 - Glycoside hydrolase, family 17 protein 1e-3 At4g17180 glycosyl hydrolase family 17 protein S.X. H.G.
0.35 41.7 Os04g0501100 9632.m04034 - MRS2-5 1e-17 At1g80900 magnesium transporter CorA-like family protein (MGT1) (MRS2) S.X. H.G.
0.33 38.8 Os05g0112900 AK103016.1 - TPR-like domain containing protein 3e-5 At2g44880 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.30 32.7 Os11g0106800 9639.m00055 - Hypothetical protein 3e-1 At3g06780 glycine-rich protein S.X. H.G.
0.30 32.7 Os03g0712900 AK103803.1 - TPR-like domain containing protein 1e+0 At1g54240 DNA binding S.X. H.G.
0.28 31.1 Os09g0546400 AK072378.1 - - 1e+0 At2g41225 unknown protein S.X. H.G.
0.28 31.1 Os04g0395500 9632.m03094 - Conserved hypothetical protein 8e-2 At5g58782 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative S.X. H.G.
0.28 31.1 Os07g0645700 AK120856.1 - Conserved hypothetical protein 4e-1 At4g37710 VQ motif-containing protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
60.6 99.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.9 99.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.1 99.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.3 99.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.9 99.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.9 99.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.3 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.2 99.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.9 99.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-6 56 Os02g0664700 AK065482.1 - Conserved hypothetical protein 2e-1 At2g36261 unknown protein C.G. S.X.
0.03 7e-5 50 Os03g0377900 9631.m02559 - - 2e-2 At5g46780 VQ motif-containing protein C.G. S.X.
0.02 5e-6 54 Os10g0408700 AK068095.1 - Protein phosphatase 2C-like domain containingprotein 1e-1 At3g18360 VQ motif-containing protein C.G. S.X.
0.02 2e-5 52 Os07g0682800 AK066262.1 - Apyrase 7e-11 At3g04080 ATAPY1 (APYRASE 1) C.G. S.X.
0.02 7e-5 50 Os05g0141700 AK065644.1 - Phosphoglycerate/bisphosphoglycerate mutase familyprotein 4e-8 At3g05170 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.02 7e-5 50 Os06g0181100 AK073372.1 - Octicosapeptide/Phox/Bem1p domain containingprotein 4e-3 At3g49930 zinc finger (C2H2 type) family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-2 40 Arabidopsis thaliana At1g54215 841862 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA - - - C.G. S.X.
0.03 1e-2 42 Glycine max GmaAffx.66307.1.S1_at BM309319 - - 9e-4 At2g02880 mucin-related C.G. S.X.
0.07 2e-5 50 Hordeum vulgare Contig23507_at Contig23507 - - 2e+0 At2g21240 BPC4 (BASIC PENTACYSTEINE 4) C.G. S.X.
0.02 7e-1 36 Populus trichocarpa PtpAffx.113508.1.S1_at BU809203 hypothetical protein - 1e+0 At1g74230 GR-RBP5 (glycine-rich RNA-binding protein 5) C.G. S.X.
0.06 2e-3 44 Triticum aestivum Ta.3102.1.A1_at BQ170880 - - 2e+0 At5g67480 BT4 (BTB AND TAZ DOMAIN PROTEIN 4) C.G. S.X.
0.04 6e-1 34 Vitis vinifera 1619140_at CF606031 hypothetical protein LOC100246049 - 4e-4 At2g35270 DNA-binding protein-related C.G. S.X.
0.03 1e-2 40 Zea mays Zm.16508.3.A1_at AI739900 ribosomal protein L39 - 4e-9 At3g02190 60S ribosomal protein L39 (RPL39B) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage