CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0554900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.64 83.4 Os04g0554900 9632.m04518 - - 8e-1 At2g32890 RALFL17 (RALF-LIKE 17) S.X. H.G.
0.28 31.1 Os02g0494700 9630.m02790 - DNA glycosylase family protein 8e-16 At2g36490 DML1 (DEMETER-LIKE 1) S.X. H.G.
0.23 21.2 Os03g0861200 AK073260.1 - Hypothetical protein 7e-1 At2g14670 ATSUC8 (Sucrose-proton symporter 8) S.X. H.G.
0.22 19.4 Os04g0478200 9632.m03817 - - 3e-1 At4g04830 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein S.X. H.G.
0.22 19.4 Os08g0510101 9636.m04040 - - 2e+0 At4g05265 unknown protein S.X. H.G.
0.20 16.5 Os04g0356400 9632.m02717 - - 3e+0 At3g58450 universal stress protein (USP) family protein S.X. H.G.
0.19 15.1 Os01g0240800 9629.m01368 - - 2e+0 At3g51440 strictosidine synthase family protein S.X. H.G.
0.18 13.7 Os02g0146300 9630.m00448 - - 2e+0 At3g05710 SYP43 (SYNTAXIN OF PLANTS 43) S.X. H.G.
0.15 10.3 Os07g0661200 NM_186019.1 - - 4e+0 At5g45630 unknown protein S.X. H.G.
0.13 8.2 Os02g0514232 9629.m04819 - - 8e-1 At5g35900 LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.8 99.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
50.8 99.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
41.1 99.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
39.7 99.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.3 99.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.7 99.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.2 99.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.7 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 40 Os09g0502200 AK102600.1 - Beta-1,3-glucanase homologue (Fragment) 1e+0 At3g19030 unknown protein C.G. S.X.
0.02 1e-1 38 Os05g0105300 AK069395.1 - CAP-Gly domain containing protein 5e-2 At1g71440 PFI (PFIFFERLING) C.G. S.X.
0.02 1e-1 38 Os06g0264300 AK061556.1 - UV excision repair protein Rad23 family protein 1e-12 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 8e-1 34 Arabidopsis thaliana At2g32890 817850 RALFL17 (RALF-LIKE 17) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. This gene is contained within a highly AT-rich repetitive sequence region. - - - C.G. S.X.
0.03 1e+0 34 Glycine max PsAffx.C74000004_at PsAffx.C74000004 - - 3e-1 At1g52440 - C.G. S.X.
0.04 1e-1 36 Hordeum vulgare Contig13527_at Contig13527 - - 4e-2 At5g59570 myb family transcription factor C.G. S.X.
0.04 4e+0 32 Populus trichocarpa PtpAffx.89304.1.A1_at CV229973 global transcription factor group - 1e-3 At5g46030 unknown protein C.G. S.X.
0.04 8e-1 34 Triticum aestivum TaAffx.38391.1.S1_at BJ235080 - - 4e+0 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.04 9e-1 32 Vitis vinifera 1618929_at CF211649 - - 4e+0 At5g56020 - C.G. S.X.
0.03 1e+0 32 Zea mays Zm.8557.1.A1_at BM336541 - - 6e+0 At5g13120 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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