CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0551800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0551800 AK121568.1 - T-complex protein 1, alpha subunit (TCP-1-alpha)(CCT-alpha) 4e-40 At3g20050 ATTCP-1 S.X. H.G.
0.73 91.1 Os03g0619400 CB653322 - Chaperonin Cpn60 family protein 1e-57 At5g20890 chaperonin, putative S.X. H.G.
0.67 87.2 Os06g0687700 AK109357.2 - T-complex protein 1, eta subunit (TCP-1-eta)(CCT-eta) (HIV-1 Nef interacting protein) 2e-44 At3g11830 chaperonin, putative S.X. H.G.
0.67 87.2 Os05g0147400 AK062146.1 - T-complex protein 1, zeta subunit (TCP-1-zeta)(CCT-zeta) (CCT-zeta- 1) 6e-67 At5g16070 chaperonin, putative S.X. H.G.
0.63 82.7 Os06g0538000 AK069949.1 - Chaperonin Cpn60/TCP-1 family protein 5e-83 At5g26360 chaperonin, putative S.X. H.G.
0.46 60.9 Os02g0332200 AK067672.1 - T-complex protein 1 delta subunit 2e-29 At3g18190 chaperonin, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.0 98.0 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
9.1 97.9 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
8.9 97.8 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
8.1 97.7 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
7.1 97.4 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.0 97.4 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.0 97.4 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.8 97.3 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.7 96.9 GSM275411 Azucena root tip_Buckled at the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.7 96.9 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-5 52 Os01g0737100 AK108262.1 - - 8e+0 At4g15710 unknown protein C.G. S.X.
0.02 3e-5 52 Os02g0177700 AK119941.1 - Plant integral membrane protein family protein 2e+0 At5g65180 - C.G. S.X.
0.02 1e-4 50 Os06g0162600 AK066755.1 - SAM (and some other nucleotide) binding motifdomain containing protein 2e+0 At3g03750 SET domain-containing protein C.G. S.X.
0.02 1e-1 38 Os01g0825500 AK060613.1 - Nodulin-like domain containing protein 4e-2 At3g01630 - C.G. S.X.
0.02 5e-1 36 Os02g0786300 9630.m05407 - Typical P-type R2R3 Myb protein (Fragment) 2e-17 At4g37780 MYB87 (MYB DOMAIN PROTEIN 87) C.G. S.X.
0.01 5e-1 36 Os02g0314600 AK068924.1 - Peptidase A1, pepsin family protein 1e+0 At5g55570 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 4e-40 167 Arabidopsis thaliana At3g20050 821544 ATTCP-1 Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). - - - C.G. S.X.
0.17 3e-14 81 Glycine max Gma.3183.3.S1_at BU964617 - - 3e-16 At3g20050 ATTCP-1 C.G. S.X.
0.69 0 1532 Hordeum vulgare Contig3654_s_at Contig3654 - - 2e-36 At3g20050 ATTCP-1 C.G. S.X.
0.61 3e-88 327 Populus trichocarpa PtpAffx.202134.1.S1_at pmrna4263 hypothetical protein - 1e-101 At3g20050 ATTCP-1 C.G. S.X.
0.68 0 1457 Triticum aestivum Ta.28393.1.S1_a_at BG607691 - - 1e-37 At3g20050 ATTCP-1 C.G. S.X.
0.43 1e-105 383 Vitis vinifera 1616103_at CF209493 hypothetical protein LOC100249575 - 1e-138 At3g20050 ATTCP-1 C.G. S.X.
0.70 0 1701 Zea mays Zm.6975.1.S1_at AW066660 hypothetical protein LOC100272316 - 4e-40 At3g20050 ATTCP-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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