Gene omics information

Query gene ID	Os04g0547500
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	76.3	Os04g0547500	9632.m04453	-	-	5e-4	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.92	99.1	Os08g0426200	9636.m03305	-	-	2e+0	At3g17580	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	Os04g0366500	9632.m02816	-	-	1e+1	At3g51060	STY1 (STYLISH 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.75	91.9	Os04g0134700	9632.m00384	-	-	1e+1	At5g58500	LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os01g0528900	9629.m03236	-	-	4e+0	At4g31150	endonuclease V family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os01g0521100	9629.m03165	-	Hypothetical protein	3e+0	At4g10420	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os10g0350100	NM_195936.1	-	-	4e-1	At3g47710	bHLH family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
145.9	100.0	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
61.6	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
55.8	99.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.0	98.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4	98.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	9e-109	395	Os04g0547600	AY339379.1	-	Pathogenesis-related transcriptional factor andERF domain containing protein	3e-3	At4g27950	CRF4 (CYTOKININ RESPONSE FACTOR 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	1e-73	278	Os02g0655200	AY339378.1	-	Ethylene responsive element binding factor3(OsERF3)	2e-1	At4g27950	CRF4 (CYTOKININ RESPONSE FACTOR 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	6e-36	153	Os10g0562900	AY341826.1	-	Pathogenesis-related transcriptional factor andERF domain containing protein	6e-1	At4g17490	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	4e-34	147	Os03g0150200	AY339376.1	-	Ethylene-responsive element binding protein	8e-2	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	5e-30	133	Os04g0257500	AK107745.1	-	Ethylene-responsive element binding protein	7e-3	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-4	46	Arabidopsis thaliana	At5g47220	834768	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box–dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	8e-13	75	Glycine max	GmaAffx.93567.1.S1_at	CF808176	-	-	1e-3	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select
0.35	2e-54	212	Hordeum vulgare	Contig17873_at	Contig17873	-	-	4e-1	At4g17490	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	C.G.	S.X.	Please select
0.05	1e-5	52	Populus trichocarpa	PtpAffx.152047.1.S1_s_at	BU862560	AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor	-	2e-12	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	1e-23	111	Triticum aestivum	TaAffx.81079.1.S1_at	CA689720	-	-	6e-2	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	C.G.	S.X.	Please select
0.12	6e-13	73	Vitis vinifera	1618661_s_at	CF518549	hypothetical protein LOC100254504	-	1e-1	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	C.G.	S.X.	Please select
0.22	2e-44	178	Zea mays	Zm.17956.1.A1_at	CF637428	-	-	2e+0	At3g20570	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006310	Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage