CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0543000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.74 91.4 Os04g0543000 AK064119.1 - Protein kinase 1e-3 At2g39110 protein kinase, putative S.X. H.G.
0.33 38.8 Os04g0537800 AK103654.1 - Protein of unknown function DUF26 domaincontaining protein 4e-2 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) S.X. H.G.
0.26 25.6 Os03g0127900 AK062977.1 - Conserved hypothetical protein 4e-8 At5g51710 KEA5 S.X. H.G.
0.26 25.6 Os11g0546300 AK121962.1 - Patatin family protein 3e-9 At1g33270 patatin-related S.X. H.G.
0.24 22.4 Os08g0128200 AK120428.1 - Conserved hypothetical protein 4e+0 At3g49620 DIN11 (DARK INDUCIBLE 11) S.X. H.G.
0.24 22.4 Os05g0150800 AK103505.1 - C-1-tetrahydrofolate synthase, cytoplasmic (C1-THFsynthase) [Includes: Methylenetetrahydrofolatedehydrogenase (EC 1.5.1.5) 3e-18 At3g12290 tetrahydrofolate dehydrogenase/cyclohydrolase, putative S.X. H.G.
0.24 22.4 Os04g0691800 CB651732 - C2 domain containing protein 2e-2 At3g23830 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) S.X. H.G.
0.18 13.7 Os02g0741300 AK120667.1 - Glycoside hydrolase, family 47 protein 1e-33 At1g27520 glycoside hydrolase family 47 protein S.X. H.G.
0.18 13.7 Os08g0532400 AK101608.1 - Nodulin-like protein 5e-12 At3g01930 nodulin family protein S.X. H.G.
0.17 12.6 Os03g0684000 AK105025.2 - Zn-finger, GATA type domain containing protein 1e-2 At3g21175 ZML1 (ZIM-LIKE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.8 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.5 98.2 GSM278847 WuYun3-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
10.3 98.1 GSM278849 WuYun3-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
10.1 98.0 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
8.1 97.7 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
6.9 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM173093 Rice OsSRT1 RNAi transgenic line LM2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
6.8 97.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM278844 WuYun3-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 9e-34 147 Os02g0650500 AK063883.1 - Protein kinase-like (Protein serine/threoninekinase) 7e-2 At1g61590 protein kinase, putative C.G. S.X.
0.10 9e-74 280 Os04g0542900 AK068610.1 - Conserved hypothetical protein 2e-1 At3g42310 unknown protein C.G. S.X.
0.08 2e-37 159 Os06g0714900 AK105337.1 - Protein kinase domain containing protein 6e-2 At2g39110 protein kinase, putative C.G. S.X.
0.05 1e-20 103 Os09g0533600 AK070024.1 - Probable serine/threonine-protein kinase NAK (EC2.7.1.37) 2e-1 At5g35580 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.05 7e-10 67 Os06g0703000 AK072944.1 - Protein kinase domain containing protein 5e-5 At5g35580 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.04 3e-9 65 Os03g0364400 AK066529.1 - Protein kinase domain containing protein 4e-3 At1g61590 protein kinase, putative C.G. S.X.
0.03 7e-10 67 Os02g0777800 AK066978.1 - Protein kinase domain containing protein 2e-9 At5g35580 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 46 Arabidopsis thaliana At2g39110 818497 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA - - - C.G. S.X.
0.02 2e-3 46 Glycine max Gma.542.1.S1_at CD400586 - - 4e-1 At4g37790 HAT22 C.G. S.X.
0.08 4e-17 89 Hordeum vulgare Contig17408_at Contig17408 - - 1e-4 At2g39110 protein kinase, putative C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.101629.1.A1_at CV257257 - - 5e+0 At5g02120 OHP (ONE HELIX PROTEIN) C.G. S.X.
0.06 4e-16 87 Triticum aestivum TaAffx.37633.1.S1_at BJ270861 - - 2e-2 At2g39110 protein kinase, putative C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1616189_at CF511570 hypothetical protein LOC100260741 - 6e-18 At1g75820 CLV1 (CLAVATA 1) C.G. S.X.
0.04 2e-6 54 Zea mays ZmAffx.117.1.A1_at AI665629 serine/threonine-protein kinase NAK - 8e+0 At3g12835 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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