Gene omics information

Query gene ID Os04g0542200
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.9Os04g0542200AK120923.1-Oligopeptide transporter OPT superfamily protein6e-9At5g24380YSL2 (YELLOW STRIPE LIKE 2)S.X.H.G.
0.6787.2Os03g0237100AK073738.1-Aldo/keto reductase family protein2e-1At1g11690unknown proteinS.X.H.G.
0.6787.2Os03g0194600AK062839.1-Protein of unknown function DUF568 domaincontaining protein6e+0At5g53030unknown proteinS.X.H.G.
0.4051.1Os02g0714600AK103643.1-Phosphoribosyl pyrophosphate synthase isozyme 4(EC 2.7.6.1)1e-11At2g42910ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)S.X.H.G.
0.3846.9Os02g0650300AK063464.1-Oligopeptide transporter OPT superfamily protein4e-9At4g24120YSL1 (YELLOW STRIPE LIKE 1)S.X.H.G.
0.2727.5Os12g0126200AK099983.1--3e+0At3g24110calcium-binding EF hand family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
43.699.9GSM359908IR29 root, control, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
28.999.6GSM359915IR63731 root, control, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
27.599.6GSM359912IR29 root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
18.599.0GSM359904FL478 root, control, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.598.8GSM359902FL478 root, control, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
15.798.7GSM359909IR29 root, control, biological replicate 2GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
15.398.7GSM359920Pokkali root, control, biological replicate 2GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
15.298.7GSM359918IR63731 root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
14.998.6GSM359919Pokkali root, control, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.298.2GSM359913IR63731 root, control, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.322e-1999Os02g06499009630.m04172-Iron-phytosiderophore transporter protein yellowstripe 12e-5At5g24380YSL2 (YELLOW STRIPE LIKE 2)C.G.S.X.
0.193e-58228Os04g0542800AK070304.1-Oligopeptide transporter OPT superfamily protein6e-9At5g24380YSL2 (YELLOW STRIPE LIKE 2)C.G.S.X.
0.135e-1791Os02g0650300AK063464.1-Oligopeptide transporter OPT superfamily protein4e-9At4g24120YSL1 (YELLOW STRIPE LIKE 1)C.G.S.X.
0.071e-1483Os04g0674600AK069645.1-Oligopeptide transporter OPT superfamily protein2e-11At3g17650YSL5 (YELLOW STRIPE LIKE 5)C.G.S.X.
0.051e-1483Os02g0116400AK072347.1-Oligopeptide transporter OPT superfamily protein6e-3At4g28990RNA-binding protein-relatedC.G.S.X.
0.053e-1275Os04g0524500AK067235.1-Oligopeptide transporter OPT superfamily protein1e-6At1g65730YSL7 (YELLOW STRIPE LIKE 7)C.G.S.X.
0.057e-1067Os02g06333009630.m04040-EspB-like protein5e-12At1g65730YSL7 (YELLOW STRIPE LIKE 7)C.G.S.X.
0.032e-1069Os01g0829900AK070618.1-Oligopeptide transporter OPT superfamily protein1e+0At3g17650YSL5 (YELLOW STRIPE LIKE 5)C.G.S.X.
0.032e-1069Os04g0390500AK100148.1-Iron-phytosiderophore transporter protein yellowstripe 11e-21At3g27020YSL6 (YELLOW STRIPE LIKE 6)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.116e-963Arabidopsis thalianaAt5g24380832509YSL2 (YELLOW STRIPE LIKE 2)closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1---C.G.S.X.
0.073e-552Glycine maxGma.15578.1.S1_atCD414652--2e-15At5g53550YSL3 (YELLOW STRIPE LIKE 3)C.G.S.X.
0.302e-149529Hordeum vulgareContig19081_atContig19081--2e-3At5g53550YSL3 (YELLOW STRIPE LIKE 3)C.G.S.X.
0.082e-1585Populus trichocarpaPtpAffx.29140.1.S1_atDN496765oligopeptide transporter OPT family-6e-13At5g24380YSL2 (YELLOW STRIPE LIKE 2)C.G.S.X.
0.183e-38161Triticum aestivumTaAffx.55509.1.S1_atCA665154--7e-5At4g24120YSL1 (YELLOW STRIPE LIKE 1)C.G.S.X.
0.095e-1995Vitis vinifera1617609_atCF207468hypothetical protein LOC100255514-3e-24At5g24380YSL2 (YELLOW STRIPE LIKE 2)C.G.S.X.
0.161e-1481Zea maysZm.582.1.S1_atAF186234.2yellow stripe1-3e-1At5g24380YSL2 (YELLOW STRIPE LIKE 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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