CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0534200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os04g0534200 AK109583.1 - Receptor kinase-like protein 8e-4 At5g41180 leucine-rich repeat protein kinase, putative S.X. H.G.
0.91 98.9 Os08g0130000 9636.m00276 - Conserved hypothetical protein 1e-11 At2g04305 magnesium transporter CorA-like protein-related S.X. H.G.
0.83 95.8 Os05g0143800 AK106538.1 - GH3 auxin-responsive promoter family protein 1e+0 At2g46505 SDH4 S.X. H.G.
0.67 87.2 Os05g0148900 AK120912.1 - Glutathione-S-transferase 19E50 1e+0 At1g03860 ATPHB2 (PROHIBITIN 2) S.X. H.G.
0.67 87.2 Os02g0448000 9630.m02338 - Protein of unknown function DUF296 domaincontaining protein 8e-6 At4g22810 DNA-binding protein-related S.X. H.G.
0.32 36.3 Os12g0640700 AK108649.1 - N/apple PAN domain containing protein 8e-1 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.7 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.0 98.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-7 59 Os04g0683600 AK065557.1 - Receptor kinase-like protein 3e-7 At1g63430 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 4e-7 57 Os01g0509700 AK105301.1 - Hypothetical protein 1e+0 At4g34190 SEP1 (STRESS ENHANCED PROTEIN 1) C.G. S.X.
0.02 2e-2 42 Os01g0674800 AK059169.1 - Protein kinase domain containing protein 8e-8 At5g45840 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 9e-2 40 Os05g0560300 AK065592.1 - Protein kinase domain containing protein 4e-3 At5g58540 protein kinase family protein C.G. S.X.
0.02 4e-1 38 Os01g0202900 NM_188317.1 - Hypothetical protein 1e+0 At5g47920 unknown protein C.G. S.X.
0.01 4e-7 57 Os08g0483200 AK068161.1 - - 2e-3 At2g23320 WRKY15 C.G. S.X.
0.01 5e-1 38 Os07g0145400 AK103262.1 - Protein kinase domain containing protein 4e-14 At4g20940 leucine-rich repeat family protein C.G. S.X.
0.01 5e-1 38 Os12g0615300 AK119448.1 - - 4e-7 At3g17410 serine/threonine protein kinase, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-4 46 Arabidopsis thaliana At5g41180 834120 leucine-rich repeat protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA - - - C.G. S.X.
0.02 2e-2 42 Glycine max GmaAffx.81447.1.S1_at BE021850 - - 5e-25 At1g63430 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.04 9e-2 38 Hordeum vulgare HX12D23r_at HX12D23r - - 3e-1 At1g80640 protein kinase family protein C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.39603.1.S1_at CV245547 - - 1e+0 At5g20060 phospholipase/carboxylesterase family protein C.G. S.X.
0.13 6e-11 69 Triticum aestivum TaAffx.23369.2.S1_at CA607232 - - 1e+0 At5g07730 unknown protein C.G. S.X.
0.03 6e-5 48 Vitis vinifera 1617238_at CD800896 hypothetical protein LOC100258246 - 3e-27 At1g63430 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.26 5e-43 174 Zea mays Zm.17711.1.A1_at CO518782 - - 1e+0 At4g25490 CBF1 (C-REPEAT/DRE BINDING FACTOR 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage