CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0532100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os04g0532100 AK109281.1 - Short-chain dehydrogenase/reductase SDR familyprotein 2e-1 At3g59710 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.60 79.7 Os07g0638500 AK108983.1 - - 8e+0 Atmg01370 - S.X. H.G.
0.50 68.0 Os04g0494600 AK110895.1 - Protein of unknown function DUF642 family protein 5e-2 At3g17410 serine/threonine protein kinase, putative S.X. H.G.
0.50 68.0 Os07g0524900 AK071512.1 - Protein of unknown function DUF6 domain containingprotein 3e+0 At4g16240 unknown protein S.X. H.G.
0.40 51.1 Os06g0660200 AK101191.1 - Auxin efflux carrier component 2 (AtPIN2) (Auxinefflux carrier AGR) (Polar-auxin-transport effluxcomponent AGRAVITROPIC 1) (AtAGR1) (Ethylene insensitiveroot 1) (AtEIR1) (WAVY6) 1e-15 At1g70940 PIN3 (PIN-FORMED 3) S.X. H.G.
0.30 32.7 Os02g0454500 AK064156.1 - Membrane bound O-acyl transferase, MBOAT familyprotein 5e-5 At5g55360 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.7 99.6 GSM275412 Azucena root tip Buckled at the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
26.3 99.5 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
23.1 99.3 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
21.1 99.2 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
18.6 99.0 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
17.3 98.9 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
14.9 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.6 98.4 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
12.6 98.4 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
11.7 98.2 GSM275413 Azucena root tip_Buckled at the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 4e-50 200 Os04g0532400 CF292249 - Short-chain dehydrogenase/reductase SDR familyprotein 2e+0 At2g21160 translocon-associated protein alpha (TRAP alpha) family protein C.G. S.X.
0.03 5e-6 54 Os07g0112700 AK073121.1 - Plastocyanin-like domain containing protein 3e-2 At3g23245 unknown protein C.G. S.X.
0.03 2e-2 42 Os06g0210100 AK120435.1 - contains InterPro domain(s): IPR000348, IPR009038 8e-9 At1g21900 emp24/gp25L/p24 family protein C.G. S.X.
0.02 2e-2 42 Os02g0745700 AK103058.1 - Sterol desaturase family protein 2e-25 At1g69640 SBH1 (SPHINGOID BASE HYDROXYLASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At3g59710 825140 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPA - - - C.G. S.X.
0.02 9e-1 36 Glycine max GmaAffx.78636.1.S1_at BQ627652 - - 1e+1 At5g20500 glutaredoxin, putative C.G. S.X.
0.45 7e-64 244 Hordeum vulgare Contig13529_at Contig13529 - - 3e+0 At3g18470 unknown protein C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.219017.1.S1_at pmrna34806 hypothetical protein - 3e+0 At2g39100 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.34 8e-56 218 Triticum aestivum Ta.30531.1.A1_at CK196859 - - 2e+0 At3g18470 unknown protein C.G. S.X.
0.03 3e+0 32 Vitis vinifera 1616244_at CA810108 hypothetical protein LOC100258479 - 3e-7 At3g61220 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.51 1e-46 186 Zea mays Zm.13975.1.A1_at CK985455 carbonyl reductase 3 - 6e-1 At4g20880 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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