CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0531700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os04g0531700 AK119481.1 - Glucose/ribitol dehydrogenase family protein 4e+0 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.38 46.9 Os01g0148000 CB642477 - Zn-finger (putative), N-recognin domain containingprotein 3e-12 At5g02310 PRT6 (PROTEOLYSIS 6) S.X. H.G.
0.33 38.8 Os08g0295000 AK062297.1 - Conserved hypothetical protein 5e-1 At1g76065 - S.X. H.G.
0.33 38.8 Os04g0401300 AK121122.1 - CBS domain containing protein 1e-2 At2g23320 WRKY15 S.X. H.G.
0.31 34.5 Os09g0525600 AK063524.1 - UBX domain containing protein 2e-11 At4g11740 SAY1 S.X. H.G.
0.25 24.1 Os01g0772200 AK060471.1 - The start codon is not identified. 7e-4 At1g75510 transcription initiation factor IIF beta subunit (TFIIF-beta) family protein S.X. H.G.
0.20 16.5 Os03g0376800 AK069760.1 - KH, type 1 domain containing protein 1e+0 At3g15990 SULTR3 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 96.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.6 96.3 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
4.5 96.3 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
4.3 96.1 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
4.2 96.0 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
3.9 95.8 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.8 95.7 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.7 95.6 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
3.2 94.9 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
3.1 94.8 GSM159212 Seed (S2, 3 - 4 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 38 Os04g0532400 CF292249 - Short-chain dehydrogenase/reductase SDR familyprotein 2e+0 At2g21160 translocon-associated protein alpha (TRAP alpha) family protein C.G. S.X.
0.01 3e-2 42 Os06g0232300 AK103208.1 - Auxin transport protein REH1 1e-25 At1g70940 PIN3 (PIN-FORMED 3) C.G. S.X.
0.01 3e-2 42 Os06g0247900 AK065325.1 - Endo-beta-1,4-glucanase precursor (EC 3.2.1.4) 1e-5 At1g64390 AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Arabidopsis thaliana At4g23430 828442 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOMFPA - - - C.G. S.X.
0.03 8e-2 40 Glycine max GmaAffx.6095.1.S1_at BI470446 - - 5e-3 At3g61220 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.49 9e-129 460 Hordeum vulgare Contig9700_at Contig9700 - - 4e-2 At1g07440 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.04 2e-2 42 Populus trichocarpa PtpAffx.114932.2.S1_at DN492143 hypothetical protein - 6e-1 At3g61220 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.46 2e-76 287 Triticum aestivum Ta.4924.1.A1_at CK152804 - - 4e-2 At1g07440 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1616244_at CA810108 hypothetical protein LOC100258479 - 3e-7 At3g61220 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.04 4e-1 36 Zea mays Zm.12736.2.S1_a_at AI881252 - - 5e+0 At4g25720 QC (GLUTAMINYL CYCLASE) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage