CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0528400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os04g0528400 AK101159.1 - Hus1-like protein family protein 2e-8 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) S.X. H.G.
0.91 98.9 Os07g0598300 AK122151.1 - SNF2-related domain containing protein 3e-11 At5g07810 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein S.X. H.G.
0.71 89.6 Os08g0166500 AK103907.1 - Hypothetical protein 5e-2 At3g09735 DNA-binding S1FA family protein S.X. H.G.
0.63 82.7 Os03g0849700 AK111868.1 - TPR-like domain containing protein 1e-1 At4g02750 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.59 78.0 Os08g0520400 AK064309.1 - Conserved hypothetical protein 2e+0 At5g23940 EMB3009 (embryo defective 3009) S.X. H.G.
0.59 78.0 Os02g0772300 AK071492.1 - GCN5-related N-acetyltransferase domain containingprotein 3e+0 At5g49540 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
58.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.2 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.3 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.1 99.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.8 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-163 577 Os04g0528300 AK064945.1 - ABC transporter related domain containing protein 2e-12 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) C.G. S.X.
0.05 5e-23 111 Os10g0494300 AK072452.1 - ABC transporter 3e-69 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) C.G. S.X.
0.04 5e-23 111 Os05g0222200 AK068591.1 - ABC transporter 4e-13 At3g21090 ABC transporter family protein C.G. S.X.
0.03 1e-5 54 Os07g0288700 AK100175.1 - ABC transporter related domain containing protein 3e-1 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) C.G. S.X.
0.01 1e-8 63 Os09g0472100 AK120390.1 - ABC transporter 2e-2 At1g51500 CER5 (ECERIFERUM 5) C.G. S.X.
0.01 3e-6 56 Os09g0125900 AK065634.1 - ATP-binding cassette, sub-family G, member 1(White protein homolog) (ATP-binding cassette transporter8). Splice isoform 3 6e-2 At1g51500 CER5 (ECERIFERUM 5) C.G. S.X.
0.01 5e-3 44 Os09g0327200 9637.m01313 - PCMP-H2 protein (Fragment) 3e-4 At4g02750 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 2e-2 42 Os08g0249600 9636.m01513 - Diacylglycerol kinase, catalytic region domaincontaining protein 3e-11 At4g30340 ATDGK7 (Diacylglycerol kinase 7) C.G. S.X.
0.01 8e-2 40 Os06g0294200 AK119403.1 - Hypothetical protein 4e-1 At4g34600 unknown protein C.G. S.X.
0.01 3e-1 38 Os03g0173300 9631.m00707 - - 2e-2 At5g07600 oleosin / glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-8 61 Arabidopsis thaliana At1g17840 838363 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix. - - - C.G. S.X.
0.03 3e-2 42 Glycine max GmaAffx.87119.1.S1_at BM309295 - - 8e-59 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) C.G. S.X.
0.11 1e-128 460 Hordeum vulgare Contig6704_at Contig6704 - - 2e-26 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) C.G. S.X.
0.06 5e-13 77 Populus trichocarpa PtpAffx.5581.2.S1_a_at CF227975 - - 6e-39 At1g52530 - C.G. S.X.
0.07 6e-49 196 Triticum aestivum Ta.8225.1.S1_at CK208464 - - 2e-29 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) C.G. S.X.
0.07 4e-4 46 Vitis vinifera 1611325_at CF211447 hypothetical protein LOC100263167 - 5e-64 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) C.G. S.X.
0.06 2e-16 87 Zea mays Zm.8050.1.A1_at CF244335 ABC transporter C05D10.3 in chromosome III - 2e-19 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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