Gene omics information

Query gene ID	Os04g0518100
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.2	Os04g0518100	AK100346.1	-	Phenylalanine ammonia-lyase	2e-11	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.52	69.6	Os03g0389700	AB122057.1	-	Phospho-2-dehydro-3-deoxyheptonate aldolase 1,chloroplast precursor (EC 2.5.1.54)(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHPsynthetase 1) (3-deoxy-D-arabino-heptulosonate7-phosphate synthase 1)	2e-42	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os05g0168500	AK100711.1	-	Nonaspanin (TM9SF) family protein	2e-27	At4g12650	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.31	34.5	Os02g0735200	AK071969.1	-	Glutamine synthetase shoot isozyme (EC 6.3.1.2)(Glutamate--ammonia ligase) (Clone lambda-GS28)	9e-78	At3g17820	ATGSKB6	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.30	32.7	Os02g0329800	AK070014.1	-	Protein of unknown function DUF563 family protein	3e-1	At3g18170	transferase, transferring glycosyl groups	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os02g0187800	AK105011.2	-	Cinnamyl-alcohol dehydrogenase (EC 1.1.1.195)(CAD) (Brown-midrib 1 protein)	1e-2	At3g19450	ATCAD4	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	25.6	Os04g0559200	AK065763.1	-	Conserved hypothetical protein	2e+0	At5g43480	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	16.5	Os11g0455800	AK101450.1	-	Serine hydroxymethyltransferase (EC 2.1.2.1)(Serine methylase) (Glycine hydroxymethyltransferase)(SHMT)	3e-68	At4g13930	SHM4 (serine hydroxymethyltransferase 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	Os02g0626100	AK121303.1	-	Phenylalanine ammonia-lyase (EC 4.3.1.5)	4e+0	At2g03430	ankyrin repeat family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.2	98.2	GSM359907	FL478 root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.8	98.1	GSM359924	Pokkali root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.5	98.1	GSM261999	IAC165, 2 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.8	98.0	GSM262007	IAC165, 11 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.7	98.0	GSM262018	Nipponbare, 11 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.7	98.0	GSM262019	Nipponbare, 11 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.4	97.9	GSM359905	FL478 root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
8.6	97.8	GSM159177	Root, 7-day-old Seedling, biological rep 1	GSE6893	Expression data for reproductive development in rice
8.3	97.7	GSM262006	IAC165, 11 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.8	97.6	GSM159179	Root, 7-day-old Seedling, biological rep 3	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	0	2070	Os02g0626100	AK121303.1	-	Phenylalanine ammonia-lyase (EC 4.3.1.5)	4e+0	At2g03430	ankyrin repeat family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	0	825	Os04g0518400	AK067801.1	-	Phenylalanine ammonia-lyase 2 (EC 4.3.1.5)	4e-22	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	0	767	Os02g0626400	BI807677	-	Phenylalanine ammonia-lyase (EC 4.3.1.5)	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.48	0	714	Os02g0627100	AK068993.1	-	Phenylalanine ammonia-lyase (EC 4.3.1.5)	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-11	71	Arabidopsis thaliana	At3g10340	820196	PAL4 (Phenylalanine ammonia-lyase 4)	F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-5	52	Glycine max	GmaAffx.86773.2.S1_at	BG839283	-	-	4e-9	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.70	0	1764	Hordeum vulgare	Contig1803_at	Contig1803	-	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.11	2e-22	109	Populus trichocarpa	PtpAffx.2272.1.S1_a_at	AY372451.1	phenylalanine amonnia lyase	-	1e-49	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.67	0	1750	Triticum aestivum	Ta.1465.1.S1_at	CD878122	phenylalanine ammonia lyase	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.14	1e-16	87	Vitis vinifera	1610206_at	CF511227	hypothetical protein LOC100241377	-	2e-29	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.69	0	1963	Zea mays	Zm.15903.1.S1_at	L77912.1	phenylalanine ammonia-lyase	-	2e-14	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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