Gene omics information

Query gene ID Os04g0517400
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7591.9Os04g0517400AK059571.1-Conserved hypothetical protein5e-15At5g18480PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6)S.X.H.G.
0.7491.4Os06g0714200BM419528-Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein8e-19At2g46700calcium-dependent protein kinase, putative / CDPK, putativeS.X.H.G.
0.7189.6Os09g0557800AK071848.1-Nonaspanin (TM9SF) family protein5e-46At5g25100endomembrane protein 70, putativeS.X.H.G.
0.6787.2Os01g0780500AF225922.1-SCAMP family protein1e-14At2g20840secretory carrier membrane protein (SCAMP) family proteinS.X.H.G.
0.6787.2Os09g0281700X59276.1-Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1)1e-17At5g47960ATRABA4CS.X.H.G.
0.6382.7Os07g0592200AK099740.1-Peptidase A1, pepsin family protein2e-11At5g43100aspartyl protease family proteinS.X.H.G.
0.5068.0Os06g0188000AK066305.1-Cyclic nucleotide-gated channel C (Fragment)1e-11At4g30360ATCNGC17S.X.H.G.
0.4051.1Os02g0822400AK062258.1-No apical meristem (NAM) protein domain containingprotein5e-3At5g09330anac082 (Arabidopsis NAC domain containing protein 82)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.096.6GSM35713314-day-old seedling, rep 2GSE14275Expression data for heat shock in rice seedlings
3.995.8GSM154948Leaf_tZ-treatment_30min_replicate 1GSE6719Cytokinin responsive genes in rice
3.795.6GSM154949Leaf_tZ-treatment_30min_replicate 2GSE6719Cytokinin responsive genes in rice
3.795.6GSM154956Leaf_tZ-treatment_120min_replicate 3GSE6719Cytokinin responsive genes in rice
3.695.5GSM195226RootGSE7951Genome-wide gene expression profiling of rice stigma
3.695.5GSM154953Leaf_DMSO-treatment_120min_replicate 3GSE6719Cytokinin responsive genes in rice
3.595.3GSM154954Leaf_tZ-treatment_120min_replicate 1GSE6719Cytokinin responsive genes in rice
3.395.1GSM173091Rice OsSRT1 RNAi transgenic line LM1GSE7197Down-regulation of OsSRT1 induces DNA ´╗┐fragmentation and cell death in rice
3.294.9GSM35713414-day-old seedling, rep 3GSE14275Expression data for heat shock in rice seedlings
3.194.8GSM154951Leaf_DMSO-treatment_120min_replicate 1GSE6719Cytokinin responsive genes in rice
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.450644Os02g0624400AK120845.1-Glycosyl transferase, family 8 protein8e-23At5g18480PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6)C.G.S.X.
0.015e-138Os08g01181009636.m00150-Amino acid-binding ACT domain containing protein4e-2At1g12420ACR8C.G.S.X.
0.012e+036Os02g05226009630.m03055--4e+0At3g55120TT5 (TRANSPARENT TESTA 5)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.155e-1583Arabidopsis thalianaAt5g18480831966PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process, biosynthetic process;C:membrane;PMFVOB---C.G.S.X.
0.122e-1585Glycine maxGmaAffx.45543.1.S1_atBG790835--4e-19At5g18480PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6)C.G.S.X.
0.068e-961Hordeum vulgareContig25252_atContig25252--5e+0At2g39415F-box family proteinC.G.S.X.
0.193e-35151Populus trichocarpaPtpAffx.211032.1.S1_atpmrna21672hypothetical protein-1e-46At5g18480PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6)C.G.S.X.
0.011e+036Triticum aestivumTa.5148.3.S1_x_atCA640435--4e+0At5g03090unknown proteinC.G.S.X.
0.022e-240Vitis vinifera1611492_s_atCF213500hypothetical protein LOC100266220-1e+0At1g49880Erv1/Alr family proteinC.G.S.X.
0.281e-59230Zea maysZm.2564.1.A1_atAY109120.1--2e+0At4g23895pleckstrin homology (PH) domain-containing protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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