CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0517400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 91.9 Os04g0517400 AK059571.1 - Conserved hypothetical protein 5e-15 At5g18480 PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6) S.X. H.G.
0.74 91.4 Os06g0714200 BM419528 - Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein 8e-19 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative S.X. H.G.
0.71 89.6 Os09g0557800 AK071848.1 - Nonaspanin (TM9SF) family protein 5e-46 At5g25100 endomembrane protein 70, putative S.X. H.G.
0.67 87.2 Os01g0780500 AF225922.1 - SCAMP family protein 1e-14 At2g20840 secretory carrier membrane protein (SCAMP) family protein S.X. H.G.
0.67 87.2 Os09g0281700 X59276.1 - Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1) 1e-17 At5g47960 ATRABA4C S.X. H.G.
0.63 82.7 Os07g0592200 AK099740.1 - Peptidase A1, pepsin family protein 2e-11 At5g43100 aspartyl protease family protein S.X. H.G.
0.50 68.0 Os06g0188000 AK066305.1 - Cyclic nucleotide-gated channel C (Fragment) 1e-11 At4g30360 ATCNGC17 S.X. H.G.
0.40 51.1 Os02g0822400 AK062258.1 - No apical meristem (NAM) protein domain containingprotein 5e-3 At5g09330 anac082 (Arabidopsis NAC domain containing protein 82) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.0 96.6 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.9 95.8 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
3.7 95.6 GSM154949 Leaf_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
3.7 95.6 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
3.6 95.5 GSM195226 Root GSE7951 Genome-wide gene expression profiling of rice stigma
3.6 95.5 GSM154953 Leaf_DMSO-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
3.5 95.3 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
3.3 95.1 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
3.2 94.9 GSM357134 14-day-old seedling, rep 3 GSE14275 Expression data for heat shock in rice seedlings
3.1 94.8 GSM154951 Leaf_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 0 644 Os02g0624400 AK120845.1 - Glycosyl transferase, family 8 protein 8e-23 At5g18480 PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6) C.G. S.X.
0.01 5e-1 38 Os08g0118100 9636.m00150 - Amino acid-binding ACT domain containing protein 4e-2 At1g12420 ACR8 C.G. S.X.
0.01 2e+0 36 Os02g0522600 9630.m03055 - - 4e+0 At3g55120 TT5 (TRANSPARENT TESTA 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 5e-15 83 Arabidopsis thaliana At5g18480 831966 PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process, biosynthetic process;C:membrane;PMFVOB - - - C.G. S.X.
0.12 2e-15 85 Glycine max GmaAffx.45543.1.S1_at BG790835 - - 4e-19 At5g18480 PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6) C.G. S.X.
0.06 8e-9 61 Hordeum vulgare Contig25252_at Contig25252 - - 5e+0 At2g39415 F-box family protein C.G. S.X.
0.19 3e-35 151 Populus trichocarpa PtpAffx.211032.1.S1_at pmrna21672 hypothetical protein - 1e-46 At5g18480 PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6) C.G. S.X.
0.01 1e+0 36 Triticum aestivum Ta.5148.3.S1_x_at CA640435 - - 4e+0 At5g03090 unknown protein C.G. S.X.
0.02 2e-2 40 Vitis vinifera 1611492_s_at CF213500 hypothetical protein LOC100266220 - 1e+0 At1g49880 Erv1/Alr family protein C.G. S.X.
0.28 1e-59 230 Zea mays Zm.2564.1.A1_at AY109120.1 - - 2e+0 At4g23895 pleckstrin homology (PH) domain-containing protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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