CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0517000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 60.9 Os04g0517000 AK101663.1 - Conserved hypothetical protein 3e-2 At1g11700 unknown protein S.X. H.G.
0.71 89.6 Os01g0326000 AK061371.1 - Peroxidase 1 2e-1 At1g44970 peroxidase, putative S.X. H.G.
0.55 73.7 Os01g0756600 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - S.X. H.G.
0.55 73.7 Os05g0406800 AK062566.1 - Leucine-rich repeat, plant specific containingprotein 2e-2 At3g53235 unknown protein S.X. H.G.
0.50 68.0 Os01g0957100 AK122121.1 - Protein kinase domain containing protein 2e+0 At3g45230 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.46 60.9 Os01g0531400 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.1 98.8 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
15.0 98.6 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
13.6 98.5 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
13.2 98.4 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
10.1 98.0 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
10.0 98.0 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
10.0 98.0 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.8 97.8 GSM409434 9311_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.5 97.7 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
8.4 97.7 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 40 Os05g0468400 AK109867.1 - Galactose oxidase, central domain containingprotein 6e-2 At1g55140 RNA binding / ribonuclease III C.G. S.X.
0.02 6e-2 40 Os07g0604800 AK061294.1 - Alpha-1,4-glucan-protein synthase [UDP-forming] 1(EC 2.4.1.112) (UDP- glucose:protein transglucosylase 1)(UPTG 1) 3e-105 At5g15650 RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2) C.G. S.X.
0.02 6e-2 40 Os11g0444000 AK099588.1 - UDP-glucosyltransferase BX8 2e-1 At5g05870 UGT76C1 (UDP-glucosyl transferase 76C1) C.G. S.X.
0.01 6e-2 40 Os01g0670800 AB071291.1 - Transcriptional factor B3 family protein 1e-3 At2g33860 ETT (ETTIN) C.G. S.X.
0.01 6e-2 40 Os02g0220600 9630.m01165 - - 1e-74 At1g57720 elongation factor 1B-gamma, putative / eEF-1B gamma, putative C.G. S.X.
0.01 6e-2 40 Os09g0461500 AK102328.1 - Esterase/lipase/thioesterase domain containingprotein 2e-4 At5g23530 AtCXE18 (Arabidopsis thaliana carboxyesterase 18) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 40 Arabidopsis thaliana At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO - - - C.G. S.X.
0.03 2e-1 38 Glycine max PsAffx.CL2608Contig1_at PsAffx.CL2608Contig1 - - 1e+0 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.45 1e-95 349 Hordeum vulgare Contig11649_at Contig11649 - - 1e-1 At1g21840 UREF (urease accessory protein F) C.G. S.X.
0.04 6e-1 36 Populus trichocarpa PtpAffx.148698.1.A1_at DN484618 - - 4e-1 At1g04555 unknown protein C.G. S.X.
0.44 1e-90 333 Triticum aestivum TaAffx.5687.1.S1_at CK211554 - - 1e-1 At1g21840 UREF (urease accessory protein F) C.G. S.X.
0.04 1e-1 36 Vitis vinifera 1610154_at CB344341 hypothetical protein LOC100256753 - 4e-3 At5g52890 AT hook motif-containing protein C.G. S.X.
0.34 7e-69 260 Zea mays Zm.14463.1.A1_at BM336602 hypothetical protein LOC100194081 - 2e+0 At4g22380 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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