Gene omics information

Query gene ID Os04g0509600
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5877.0Os04g0509600AF001505.1--1e-12At1g64780ATAMT1S.X.H.G.
0.4458.1Os04g0448300AK109494.1-Peptidase A1, pepsin family protein1e-2At2g42980aspartyl protease family proteinS.X.H.G.
0.3846.9Os02g0273700AK102828.1-VHS domain containing protein2e-8At4g32760protein transporterS.X.H.G.
0.3541.7Os01g0201200AK069537.1-Protein kinase8e-2At1g52827unknown proteinS.X.H.G.
0.3134.5Os01g0815400AK121388.1-Conserved hypothetical protein1e-1At3g42155catalytic/ hydrolase, hydrolyzing O-glycosyl compoundsS.X.H.G.
0.2931.1Os06g0268700AK120783.1-Peptidase A1, pepsin family protein2e-2At4g33490aspartic-type endopeptidaseS.X.H.G.
0.2727.5Os02g0629200AK120386.1-Plasma membrane integral protein ZmPIP2-31e+0At2g37180RD28 (RESPONSIVE TO DESICCATION 28)S.X.H.G.
0.2625.6Os05g0105000AK121285.1-Methionine S-methyltransferase (EC 2.1.1.12)(AdoMet:Met S- methyltransferase) (Hv-MMT1)1e-29At5g49810MMTS.X.H.G.
0.2422.4Os05g0179300AK100028.1-Transferase family protein4e+0At4g15150glycine-rich proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.698.2GSM359904FL478 root, control, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.098.2GSM359907FL478 root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.998.1GSM359908IR29 root, control, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.197.9GSM359903FL478 root, control, biological replicate 2GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.397.5GSM359918IR63731 root, salt-treated, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.197.4GSM359915IR63731 root, control, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.597.2GSM421706XOO, 96 hai - rep4GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.197.1GSM421703XOO, 96 hai - rep1GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.496.8GSM421683XOC, 96 hai - rep1GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.496.8GSM421726MOCK, 96 hai - rep4GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.7402734Os04g0509500AK107601.1-Conserved hypothetical protein3e-19At1g64780ATAMT1C.G.S.X.
0.560884Os02g0620600AK107204.1-Rh-like protein/ammonium transporter familyprotein2e-17At4g13510AMT1C.G.S.X.
0.550745Os02g06205009630.m03934-High affinity ammonium transporter3e-19At1g64780ATAMT1C.G.S.X.
0.054e-861Os04g03504339632.m02668--1e+1At2g04690cellular repressor of E1A-stimulated genes (CREG) familyC.G.S.X.
0.012e-346Os05g0113300AK106443.1-Conserved hypothetical protein4e-4At3g53720ATCHX20 (CATION/H+ EXCHANGER 20)C.G.S.X.
0.013e-242Os01g0377000NM_193877.1-Cytochrome P450 family protein8e-1At4g13770CYP83A1 (CYTOCHROME P450 83A1)C.G.S.X.
0.013e-242Os03g0157500AK073432.1-K+ channel tetramerisation domain containingprotein3e+0At2g32890RALFL17 (RALF-LIKE 17)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.151e-1275Arabidopsis thalianaAt1g64780842786ATAMT1encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.---C.G.S.X.
0.023e-552Glycine maxGma.9265.1.S1_atBU551320--6e-6At4g28700AMT1C.G.S.X.
0.400680Hordeum vulgareContig11711_atContig11711--1e-4At4g13510AMT1C.G.S.X.
0.084e-1067Populus trichocarpaPtp.5712.1.S1_atCK113355ammonium transporter-3e-28At1g64780ATAMT1C.G.S.X.
0.6401201Triticum aestivumTa.27312.1.S1_x_atBT009318.1Ammonium transporter-8e-17At4g13510AMT1C.G.S.X.
0.056e-961Vitis vinifera1610744_atCF415597hypothetical protein LOC100258016-1e+0At2g47170ARF1A1CC.G.S.X.
0.292e-132472Zea maysZm.11141.1.S1_atAY106810.1hypothetical protein LOC100272903-1e-7At1g64780ATAMT1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0015696The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
LGO:0006810The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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