CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0494600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0494600 AK110895.1 - Protein of unknown function DUF642 family protein 5e-2 At3g17410 serine/threonine protein kinase, putative S.X. H.G.
0.83 95.8 Os10g0459700 AK110328.1 - Xyloglucan galactosyltransferase 7e-2 At4g13990 exostosin family protein S.X. H.G.
0.50 68.0 Os04g0467000 AK073154.1 - Conserved hypothetical protein 2e+0 At4g30850 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) S.X. H.G.
0.48 63.7 Os08g0253800 AK108045.1 - Glycosyl transferase, family 2 domain containingprotein 7e-14 At4g31590 ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5) S.X. H.G.
0.44 58.1 Os02g0183000 9630.m00818 - Zinc-binding protein 2e-5 At2g12646 - S.X. H.G.
0.39 48.3 Os02g0454500 AK064156.1 - Membrane bound O-acyl transferase, MBOAT familyprotein 5e-5 At5g55360 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.1 99.9 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
38.9 99.8 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
30.8 99.7 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
30.5 99.7 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
25.6 99.5 GSM275412 Azucena root tip Buckled at the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
23.2 99.3 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
17.2 98.8 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
13.6 98.5 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
10.9 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM275411 Azucena root tip_Buckled at the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 3e-60 234 Os04g0494800 AK072539.1 - Protein of unknown function DUF642 family protein 3e+0 At1g30880 unknown protein C.G. S.X.
0.45 2e-61 238 Os04g0494900 AK073892.1 - Protein of unknown function DUF642 family protein 3e+0 At1g09260 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.41 1e-44 182 Os04g0495000 9632.m03982 - Galactose-binding like domain containing protein 4e-2 At1g80240 unknown protein C.G. S.X.
0.32 4e-50 200 Os01g0611000 AK072500.1 - Protein of unknown function DUF642 family protein 3e+0 At1g10790 - C.G. S.X.
0.17 5e-31 137 Os07g0132600 9631.m02107 - - 5e+0 At2g25770 unknown protein C.G. S.X.
0.14 4e-50 200 Os05g0469800 AK100501.1 - Pyruvate decarboxylase (EC 4.1.1.1) (Fragment) 4e-10 At5g01320 pyruvate decarboxylase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-2 40 Arabidopsis thaliana At3g17410 821005 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA - - - C.G. S.X.
0.10 2e-17 91 Glycine max Gma.12342.3.S1_at BQ081225 - - 1e-5 At5g25460 unknown protein C.G. S.X.
0.30 4e-35 149 Hordeum vulgare Contig2474_at Contig2474 - - 2e-1 At1g80240 unknown protein C.G. S.X.
0.02 4e+0 34 Populus trichocarpa PtpAffx.202617.1.S1_at pmrna5234 hypothetical protein - 2e-5 At5g26570 ATGWD3 C.G. S.X.
0.24 7e-26 119 Triticum aestivum Ta.9151.1.S1_x_at CK215909 - - 1e+1 At1g71780 unknown protein C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1622850_at CB972440 - - 1e+0 At1g05010 EFE (ETHYLENE-FORMING ENZYME) C.G. S.X.
0.14 4e-13 75 Zea mays Zm.17666.1.A1_at CF635462 hypothetical protein LOC100272483 - 2e+0 At5g25460 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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