Gene omics information

Query gene ID	Os04g0494100
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	96.4	Os04g0494100	AB096140.1	-	Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)	1e-1	At2g43590	chitinase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os04g0493400	AB003194.1	-	Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)	4e-2	At3g54420	ATEP3	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os01g0382400	AK121108.1	-	Pathogenesis-related protein PRB1-2 precursor	1e-1	At3g09590	pathogenesis-related protein, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os03g0624300	AK062353.1	-	Hypothetical protein	1e+0	At5g43211	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os01g0944700	AF443600.1	-	Glucan endo-1,3-beta-glucosidase GII precursor (EC3.2.1.39) ((1->3)- beta-glucan endohydrolase GII)((1->3)-beta-glucanase isoenzyme GII)(Beta-1,3-endoglucanase GII)	1e-2	At5g20560	beta-1,3-glucanase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os11g0592200	AY050642.1	-	Barwin domain containing protein	8e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os12g0630200	9640.m04277	-	Antifungal protein R (Fragment)	1e-1	At3g55880	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.7	99.9	GSM304664	Control for the stable mutant rice line	GSE12069	Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
35.9	99.8	GSM304653	Mutant stable line	GSE12069	Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
28.4	99.6	GSM304669	Control for the stable mutant rice line (1)	GSE12069	Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
24.2	99.4	GSM304654	Mutant stable line (1)	GSE12069	Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
14.1	98.5	GSM304397	Control for the stable transgenic rice line (1)	GSE12069	Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
13.2	98.4	GSM304497	Unstable transgenic line	GSE12069	Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
12.4	98.3	GSM387559	Transgenic line 22, biological rep. 1	GSE15448	Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
12.0	98.3	GSM304390	Stable transgenic rice line	GSE12069	Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
10.7	98.1	GSM154959	Leaf_OsRR6-overexpressor_replicate 1	GSE6720	Gene expression in OsRR6-overexpression line
9.0	97.8	GSM304646	Unstable transgenic line (1)	GSE12069	Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	0	829	Os04g0493400	AB003194.1	-	Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)	4e-2	At3g54420	ATEP3	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.30	2e-33	145	Os02g0605900	AK064754.1	-	Chitinase (EC 3.2.1.14) A	5e-1	At3g54420	ATEP3	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	1e-12	75	Os06g0726200	AK061042.1	-	Endochitinase precursor (EC 3.2.1.14)	2e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	2e-8	61	Os06g0726100	Z29962.1	-	Endochitinase precursor (EC 3.2.1.14)	1e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	3e-4	48	Os05g0138200	AK110261.1	-	Chitinase (Class II) (EC 3.2.1.14)	2e-3	At3g54420	ATEP3	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	7e-5	50	Os10g0542900	BM038035	-	Chitinase (EC 3.2.1.14) (Fragment)	3e-5	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-1	38	Arabidopsis thaliana	At2g43590	818961	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e+0	34	Glycine max	GmaAffx.89972.1.S1_s_at	CF805697	-	-	6e-5	At2g43590	chitinase, putative	C.G.	S.X.	Please select
0.36	3e-50	198	Hordeum vulgare	Contig4324_s_at	Contig4324	-	-	8e+0	At4g26060	unknown protein	C.G.	S.X.	Please select
0.05	5e-5	50	Populus trichocarpa	Ptp.987.1.S1_at	BU895364	-	-	5e-29	At3g54420	ATEP3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	1e-48	194	Triticum aestivum	Ta.2278.1.S1_x_at	CK199734	-	-	3e+0	At2g43590	chitinase, putative	C.G.	S.X.	Please select
0.11	3e-6	52	Vitis vinifera	1613871_at	CF207387	hypothetical protein LOC100256098	-	8e-6	At3g54420	ATEP3	C.G.	S.X.	Please select
0.39	6e-79	293	Zea mays	Zm.1595.1.S1_at	CD967190	endochitinase A	-	6e-1	At3g54420	ATEP3	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0051707	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
L	GO:0006032	The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.
L	GO:0016998	The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage