Gene omics information

Query gene ID Os04g0493400
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8395.8Os04g0493400AB003194.1-Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)4e-2At3g54420ATEP3S.X.H.G.
0.8094.6Os04g0494100AB096140.1-Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)1e-1At2g43590chitinase, putativeS.X.H.G.
0.8094.6Os01g0382400AK121108.1-Pathogenesis-related protein PRB1-2 precursor1e-1At3g09590pathogenesis-related protein, putativeS.X.H.G.
0.7189.6Os01g0944700AF443600.1-Glucan endo-1,3-beta-glucosidase GII precursor (EC3.2.1.39) ((1->3)- beta-glucan endohydrolase GII)((1->3)-beta-glucanase isoenzyme GII)(Beta-1,3-endoglucanase GII)1e-2At5g20560beta-1,3-glucanase, putativeS.X.H.G.
0.6787.2Os03g0624300AK062353.1-Hypothetical protein1e+0At5g43211unknown proteinS.X.H.G.
0.2016.5Os11g0170900AK067523.1-Conserved hypothetical protein1e+0At3g63080ATGPX5 (glutathione peroxidase 5)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
40.499.9GSM154959Leaf_OsRR6-overexpressor_replicate 1GSE6720Gene expression in OsRR6-overexpression line
26.099.5GSM304664Control for the stable mutant rice lineGSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
23.999.4GSM304653Mutant stable lineGSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
18.699.0GSM304669Control for the stable mutant rice line (1)GSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
18.098.9GSM304390Stable transgenic rice lineGSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
17.398.9GSM304654Mutant stable line (1)GSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
16.298.8GSM304397Control for the stable transgenic rice line (1)GSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
13.598.5GSM304395Control for the stable transgenic rice lineGSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
11.398.2GSM304646Unstable transgenic line (1)GSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
10.998.1GSM375648Taichung 65_shoot_replicate 2GSE15046Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.650837Os04g0494100AB096140.1-Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)1e-1At2g43590chitinase, putativeC.G.S.X.
0.222e-23111Os02g0605900AK064754.1-Chitinase (EC 3.2.1.14) A5e-1At3g54420ATEP3C.G.S.X.
0.077e-550Os06g0726200AK061042.1-Endochitinase precursor (EC 3.2.1.14)2e-4At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
0.055e-963Os01g0287600AK063062.1-Chitinase (Class II) (EC 3.2.1.14)3e-2At3g54420ATEP3C.G.S.X.
0.053e-448Os05g0138200AK110261.1-Chitinase (Class II) (EC 3.2.1.14)2e-3At3g54420ATEP3C.G.S.X.
0.047e-550Os06g0726100Z29962.1-Endochitinase precursor (EC 3.2.1.14)1e-4At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.104e-240Arabidopsis thalianaAt3g54420824608ATEP3encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.---C.G.S.X.
0.022e-138Glycine maxHgAffx.17148.1.S1_atCB935007--3e-1At5g43700ATAUX2-11 (AUXIN INDUCIBLE 2-11)C.G.S.X.
0.354e-25115Hordeum vulgareContig4324_s_atContig4324--8e+0At4g26060unknown proteinC.G.S.X.
0.101e-552Populus trichocarpaPtpAffx.225260.1.S1_atpmrna44483hypothetical protein-4e-13At3g54420ATEP3C.G.S.X.
0.285e-2099Triticum aestivumTa.2278.2.S1_atCK196331--5e-2At3g47540chitinase, putativeC.G.S.X.
0.073e-652Vitis vinifera1613871_atCF207387hypothetical protein LOC100256098-8e-6At3g54420ATEP3C.G.S.X.
0.287e-51200Zea maysZm.1595.1.S1_atCD967190endochitinase A-6e-1At3g54420ATEP3C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0051707A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
CGO:0006032The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.
CGO:0016998The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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