CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0490000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0490000 AK108365.1 - Protoporphyrinogen oxidase-II 2e+0 At5g57550 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) S.X. H.G.
0.50 68.0 Os01g0712900 NM_191722.1 - - 4e+0 At3g13950 unknown protein S.X. H.G.
0.43 55.4 Os07g0688400 9638.m02651 - - 2e+0 At4g19270 unknown protein S.X. H.G.
0.31 34.5 Os01g0604600 AU058134 - Conserved hypothetical protein 3e+0 At3g48675 unknown protein S.X. H.G.
0.25 24.1 Os11g0549300 9639.m03124 - KI domain interacting kinase 1 3e-8 At4g21230 protein kinase family protein S.X. H.G.
0.19 15.1 Os07g0220300 NM_186594.1 - - 2e+0 At5g54660 heat shock protein-related S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
70.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
35.6 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
27.2 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.1 99.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.4 99.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.3 99.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.2 99.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.7 99.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-3 44 Os12g0614100 9640.m04122 - - 1e-1 At1g06800 lipase class 3 family protein C.G. S.X.
0.02 1e-2 42 Os02g0555600 AK100703.1 - Amino acid-binding ACT domain containing protein 2e-5 At1g76990 ACR3 C.G. S.X.
0.02 5e-2 40 Os11g0528700 9639.m02956 - Auxin-responsive-like protein (Auxin-responsiveGH3 homologue) 3e-3 At3g63095 - C.G. S.X.
0.01 1e-2 42 Os04g0636500 AK109716.1 - NPH3 domain containing protein 3e-10 At5g03250 phototropic-responsive NPH3 family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At5g57550 835859 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) xyloglucan endotransglycosylase-related protein (XTR3) - - - C.G. S.X.
0.03 5e-1 36 Glycine max HgAffx.24245.1.S1_s_at CB825015 - - 3e+0 At5g38344 transmembrane receptor C.G. S.X.
0.03 7e-1 34 Hordeum vulgare Contig21945_at Contig21945 - - 4e+0 At2g23960 defense-related protein, putative C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.153993.1.A1_at CV233440 hypothetical protein - 1e+1 At4g19250 kelch repeat-containing protein C.G. S.X.
0.05 4e-1 36 Triticum aestivum Ta.30869.1.S1_at CN011384 - - 5e-1 At5g23950 C2 domain-containing protein C.G. S.X.
0.04 1e-1 36 Vitis vinifera 1612327_s_at CB346389 - - 3e+0 At1g50290 unknown protein C.G. S.X.
0.11 2e-44 178 Zea mays Zm.515.1.S1_at AF273767.1 protoporphyrinogen IX oxidase - 4e-3 At5g14220 HEMG2 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006779 The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
L GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage