CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0487000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 63.7 Os04g0487000 AK111312.1 - Conserved hypothetical protein 9e-2 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein S.X. H.G.
0.48 63.7 Os03g0712900 AK103803.1 - TPR-like domain containing protein 1e+0 At1g54240 DNA binding S.X. H.G.
0.43 55.4 Os10g0142900 NM_194814.1 - Conserved hypothetical protein 2e-2 At2g24290 unknown protein S.X. H.G.
0.40 51.1 Os11g0124300 AK073467.1 - GRAS transcription factor family protein 3e-5 At3g54220 SCR (SCARECROW) S.X. H.G.
0.35 41.7 Os06g0669100 9634.m04451 - DNA polymerase, beta-like region domain containingprotein 1e-14 At4g00060 MEE44 (maternal effect embryo arrest 44) S.X. H.G.
0.33 38.8 Os02g0748100 AK101365.1 - RINT-1/TIP-1 family protein 3e-7 At3g47700 MAG2 (maigo2) S.X. H.G.
0.31 34.5 Os03g0806400 AK073074.1 - Nucleic acid-binding OB-fold domain containingprotein 9e-5 At1g68765 IDA (INFLORESCENCE DEFICIENT IN ABSCISSION) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.7 99.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
33.4 99.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.4 99.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.1 99.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.7 99.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.5 99.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.4 99.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.2 99.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.7 99.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 3e-86 321 Os10g0149700 AK064371.1 - - 4e-2 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein C.G. S.X.
0.18 7e-35 151 Os11g0240700 AK100421.1 - Hypothetical protein 3e-1 At2g01780 S-locus glycoprotein, putative C.G. S.X.
0.17 2e-50 202 Os09g0112100 AK065354.1 - Conserved hypothetical protein 1e+0 At4g16195 self-incompatibility protein-related C.G. S.X.
0.12 1e-30 137 Os10g0457400 AK063553.1 - Conserved hypothetical protein 4e-2 At1g30475 - C.G. S.X.
0.07 1e-42 176 Os05g0269000 CB666416 - Hypothetical protein 3e-2 At4g39890 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) C.G. S.X.
0.07 1e-27 127 Os03g0722800 AK065777.1 - Cyclin-like F-box domain containing protein 2e+0 At3g30845 unknown protein C.G. S.X.
0.05 1e-39 167 Os10g0357700 AK106693.1 - Conserved hypothetical protein 9e-1 At4g39890 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-2 40 Arabidopsis thaliana At1g18170 838396 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPF - - - C.G. S.X.
0.01 2e+0 36 Glycine max PsAffx.C521000002_s_at PsAffx.C521000002 - - 4e+0 At1g34350 unknown protein C.G. S.X.
0.01 7e-1 36 Hordeum vulgare Contig12026_at Contig12026 - - 3e-2 At4g32714 SCRL25 (SCR-Like 25) C.G. S.X.
0.01 1e-1 40 Populus trichocarpa PtpAffx.34926.1.S1_at BI122194 - - 3e+0 At4g22920 NYE1 (NON-YELLOWING 1) C.G. S.X.
0.01 4e-1 38 Triticum aestivum TaAffx.129081.2.S1_s_at CA608630 - - 2e-2 At4g32714 SCRL25 (SCR-Like 25) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1616908_at CB347140 - - 6e-2 At1g01680 U-box domain-containing protein C.G. S.X.
0.01 4e-2 40 Zea mays Zm.6992.1.A1_at AY105449.1 16kDa membrane protein - 5e-7 At1g08380 PSAO (photosystem I subunit O) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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