CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0474800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.93 99.2 Os04g0474800 AK100820.1 - Glycoside hydrolase, family 1 protein 3e-3 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) S.X. H.G.
0.29 31.1 Os05g0159200 AK067837.1 - Lipolytic enzyme, G-D-S-L family protein 2e-4 At2g27360 lipase, putative S.X. H.G.
0.22 19.4 Os02g0695800 AK071310.1 - Oligopeptide transporter OPT superfamily protein 4e-6 At5g64410 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) S.X. H.G.
0.22 19.4 Os03g0215000 AK100038.1 - Conserved hypothetical protein 6e-14 At1g76340 integral membrane family protein S.X. H.G.
0.20 16.5 Os06g0470000 CB674913 - Protein of unknown function DUF563 family protein 2e+0 At3g54900 CXIP1 (CAX INTERACTING PROTEIN 1) S.X. H.G.
0.16 11.3 Os03g0720300 AK120961.1 - Glutamate decarboxylase isozyme 1 (EC 4.1.1.15) 7e-76 At5g17330 GAD S.X. H.G.
0.12 7.2 Os03g0724100 AK068261.1 - Cellular retinaldehyde-binding)/triple function,C-terminal domain containing protein 1e-2 At1g75170 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein S.X. H.G.
0.11 6.5 Os11g0591100 AK102348.1 - NAD-dependent epimerase/dehydratase family protein 1e-138 At5g28840 GME (GDP-D-MANNOSE 3',5'-EPIMERASE) S.X. H.G.
0.09 4.9 Os03g0749300 AK065044.1 - Exoglucanase precursor 3e-8 At5g20950 glycosyl hydrolase family 3 protein S.X. H.G.
0.09 4.9 Os05g0567700 AK065497.1 - Integral membrane protein 2e-5 At1g75220 integral membrane protein, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.7 99.6 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
22.1 99.3 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
10.0 98.0 GSM116402 Seedling_BAP treated_rep2 GSE5167 Rice seedling hormone treatment
9.5 97.9 GSM159179 Root, 7-day-old Seedling, biological rep 3 GSE6893 Expression data for reproductive development in rice
8.6 97.8 GSM116401 Seedling_BAP treated_rep1 GSE5167 Rice seedling hormone treatment
7.7 97.6 GSM431937 Shoot- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.8 97.3 GSM149409 Rice Azucena 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
6.7 97.3 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
6.6 97.3 GSM431938 Shoot- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.2 97.1 GSM173093 Rice OsSRT1 RNAi transgenic line LM2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.66 5e-161 569 Os04g0474500 AK073031.1 - Amygdalin hydrolase isoform AH I precursor (EC3.2.1.117) 7e-2 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.55 2e-105 385 Os04g0474600 9632.m03783 - Beta-primeverosidase (EC 3.2.1.149) 5e-5 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.42 3e-110 400 Os04g0474300 AK066908.1 - Conserved hypothetical protein 1e-1 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) C.G. S.X.
0.10 3e-13 77 Os04g0474700 9632.m03784 - Hypothetical protein 2e+0 At4g18692 unknown protein C.G. S.X.
0.10 1e-10 69 Os06g0320200 9634.m02112 - Beta-primeverosidase (EC 3.2.1.149) 2e-4 At3g09260 PYK10 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-3 44 Arabidopsis thaliana At1g26560 839196 BGLU40 (BETA GLUCOSIDASE 40) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:apoplast, chloroplast;BOPMFA - - - C.G. S.X.
0.10 2e-7 57 Glycine max GmaAffx.92564.1.S1_at CF808289 - - 4e-5 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.04 2e-5 50 Hordeum vulgare Contig2350_at Contig2350 - - 8e-1 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.07 7e-4 46 Populus trichocarpa PtpAffx.139109.1.S1_s_at CX168297 hypothetical protein - 5e-3 At3g03640 BGLU25 (BETA GLUCOSIDASE 25) C.G. S.X.
0.15 2e-43 176 Triticum aestivum TaAffx.4445.1.S1_at CA741494 - - 1e-3 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.06 2e-4 46 Vitis vinifera 1620808_at AY039034.1 beta-glucosidase - 4e-10 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.02 9e-1 34 Zea mays Zm.2008.1.A1_at CF623731 hypothetical protein LOC100279662 - 8e-8 At3g02990 ATHSFA1E C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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