CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0474600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.69 87.9 Os04g0474600 9632.m03783 - Beta-primeverosidase (EC 3.2.1.149) 5e-5 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) S.X. H.G.
0.67 87.2 Os03g0395100 9631.m02745 - Protein phosphatase 2C-like domain containingprotein 6e-2 At1g47380 protein phosphatase 2C-related / PP2C-related S.X. H.G.
0.67 87.2 Os02g0807200 AK105477.1 - EGF-like calcium-binding domain containing protein 7e-6 At1g48210 serine/threonine protein kinase, putative S.X. H.G.
0.67 87.2 Os01g0388500 CF294425 - Conserved hypothetical protein 3e+0 At5g47710 C2 domain-containing protein S.X. H.G.
0.56 76.3 Os07g0122300 AK103212.1 - Conserved hypothetical protein 1e+0 At2g20619 - S.X. H.G.
0.52 69.6 Os07g0109300 9635.m00087 - Conserved hypothetical protein 1e-6 At3g29760 NLI interacting factor (NIF) family protein S.X. H.G.
0.46 60.9 Os03g0424200 AK069682.1 - Protein kinase domain containing protein 5e-1 At5g62627 - S.X. H.G.
0.44 58.1 Os09g0479500 AK121624.1 - Disease resistance protein family protein 5e-1 At1g03890 cupin family protein S.X. H.G.
0.44 58.1 Os01g0685200 NM_192084.1 - Conserved hypothetical protein 9e-21 At5g38110 ASF1B (ANTI- SILENCING FUNCTION 1B) S.X. H.G.
0.44 58.1 Os01g0391500 BI812884 - Conserved hypothetical protein 5e+0 Atmg00270 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.2 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
31.6 99.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.9 99.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.4 99.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.2 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.4 99.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.9 99.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.4 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.5 99.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.6 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 0 900 Os04g0474500 AK073031.1 - Amygdalin hydrolase isoform AH I precursor (EC3.2.1.117) 7e-2 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.55 1e-105 385 Os04g0474800 AK100820.1 - Glycoside hydrolase, family 1 protein 3e-3 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.34 2e-89 331 Os04g0474300 AK066908.1 - Conserved hypothetical protein 1e-1 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) C.G. S.X.
0.09 6e-6 54 Os06g0320200 9634.m02112 - Beta-primeverosidase (EC 3.2.1.149) 2e-4 At3g09260 PYK10 C.G. S.X.
0.02 3e-8 61 Os01g0786700 NM_190834.1 - Conserved hypothetical protein 1e+1 At5g47870 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-5 50 Arabidopsis thaliana At5g42260 834231 BGLU12 (BETA GLUCOSIDASE 12) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA - - - C.G. S.X.
0.06 4e-3 44 Glycine max GmaAffx.81147.1.S1_at BQ627821 - - 6e-3 At5g24550 BGLU32 (BETA GLUCOSIDASE 32) C.G. S.X.
0.04 7e-9 61 Hordeum vulgare Contig2350_at Contig2350 - - 8e-1 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.04 3e-4 48 Populus trichocarpa Ptp.3318.1.A1_at CV276879 - - 1e-11 At5g36890 BGLU42 (BETA GLUCOSIDASE 42) C.G. S.X.
0.18 2e-7 57 Triticum aestivum TaAffx.124298.1.S1_at CK207288 - - 2e-5 At5g36890 BGLU42 (BETA GLUCOSIDASE 42) C.G. S.X.
0.05 4e-3 42 Vitis vinifera 1620679_at CB972076 hypothetical protein LOC100255914 - 2e-16 At3g18070 BGLU43 (BETA GLUCOSIDASE 43) C.G. S.X.
0.04 3e-1 36 Zea mays Zm.7453.1.A1_at BM078460 Hypothetical protein LOC100192939 - 6e-3 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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