CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0474500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os04g0474500 AK073031.1 - Amygdalin hydrolase isoform AH I precursor (EC3.2.1.117) 7e-2 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) S.X. H.G.
0.44 58.1 Os04g0518600 AK063087.1 - Hypothetical protein 5e+0 At5g13410 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein S.X. H.G.
0.38 46.9 Os01g0516400 CR280873 - Conserved hypothetical protein 9e+0 At5g15230 GASA4 (GAST1 PROTEIN HOMOLOG 4) S.X. H.G.
0.27 27.5 Os01g0150900 AK058767.1 - Hypothetical protein 9e-1 At1g07060 unknown protein S.X. H.G.
0.27 27.5 Os04g0554200 AK060752.1 - Major sperm protein domain containing protein 8e-3 At5g23680 sterile alpha motif (SAM) domain-containing protein S.X. H.G.
0.08 4.2 Os03g0118200 AK060919.1 - Conserved hypothetical protein 2e-16 At1g12600 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.2 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.3 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.66 6e-161 569 Os04g0474800 AK100820.1 - Glycoside hydrolase, family 1 protein 3e-3 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.65 0 900 Os04g0474600 9632.m03783 - Beta-primeverosidase (EC 3.2.1.149) 5e-5 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.48 9e-157 555 Os04g0474300 AK066908.1 - Conserved hypothetical protein 1e-1 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) C.G. S.X.
0.13 1e-44 182 Os04g0474700 9632.m03784 - Hypothetical protein 2e+0 At4g18692 unknown protein C.G. S.X.
0.02 1e-5 54 Os06g0320200 9634.m02112 - Beta-primeverosidase (EC 3.2.1.149) 2e-4 At3g09260 PYK10 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-2 40 Arabidopsis thaliana At1g26560 839196 BGLU40 (BETA GLUCOSIDASE 40) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:apoplast, chloroplast;BOPMFA - - - C.G. S.X.
0.04 4e-1 38 Glycine max GmaAffx.74120.1.S1_at BI945865 - - 2e-11 At1g61810 BGLU45 (BETA-GLUCOSIDASE 45) C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig10663_at Contig10663 - - 9e+0 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) C.G. S.X.
0.02 1e-1 40 Populus trichocarpa PtpAffx.216821.1.S1_s_at pmrna31856 hypothetical protein - 3e-8 At1g66280 BGLU22 C.G. S.X.
0.05 9e-17 89 Triticum aestivum TaAffx.4445.1.S1_at CA741494 - - 1e-3 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.01 2e-2 40 Vitis vinifera 1621722_at CB973627 hypothetical protein LOC100267520 - 8e-43 At1g53670 MSRB1 (methionine sulfoxide reductase B 1) C.G. S.X.
0.02 1e-1 38 Zea mays Zm.7860.1.A1_at BM333940 - - 2e-3 At4g37020 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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