CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0474300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os04g0474300 AK066908.1 - Conserved hypothetical protein 1e-1 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) S.X. H.G.
0.50 68.0 Os04g0622600 AB002266.1 - XA1 3e+0 At5g13470 unknown protein S.X. H.G.
0.43 55.4 Os01g0272600 AK067786.1 - Conserved hypothetical protein 5e-8 At5g13500 unknown protein S.X. H.G.
0.29 31.1 Os12g0281300 AK071926.1 - Pi-ta protein 3e-2 At4g36500 unknown protein S.X. H.G.
0.16 11.3 Os11g0445300 AK073557.1 - Protein kinase domain containing protein 2e-5 At5g06740 lectin protein kinase family protein S.X. H.G.
0.15 10.3 Os01g0827600 AK122173.1 - Exo70 exocyst complex subunit family protein 6e-6 At3g14090 ATEXO70D3 (exocyst subunit EXO70 family protein D3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.2 99.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 2e-156 555 Os04g0474500 AK073031.1 - Amygdalin hydrolase isoform AH I precursor (EC3.2.1.117) 7e-2 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.42 5e-110 400 Os04g0474800 AK100820.1 - Glycoside hydrolase, family 1 protein 3e-3 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.34 4e-89 331 Os04g0474600 9632.m03783 - Beta-primeverosidase (EC 3.2.1.149) 5e-5 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.09 3e-67 258 Os02g0264700 AK101666.1 - Conserved hypothetical protein 2e+0 At3g23880 F-box family protein C.G. S.X.
0.05 7e-17 91 Os04g0474700 9632.m03784 - Hypothetical protein 2e+0 At4g18692 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 40 Arabidopsis thaliana At5g54570 835545 BGLU41 (BETA GLUCOSIDASE 41) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plant-type cell wall;BOPMFA - - - C.G. S.X.
0.03 6e-4 48 Glycine max Gma.6302.1.S1_at BI786195 isoflavone conjugate-specific beta-glucosidase - 6e-5 At2g25630 BGLU14 (BETA GLUCOSIDASE 14) C.G. S.X.
0.02 5e-2 40 Hordeum vulgare Contig2347_at Contig2347 - - 3e-4 At3g18070 BGLU43 (BETA GLUCOSIDASE 43) C.G. S.X.
0.04 3e-3 46 Populus trichocarpa PtpAffx.207888.1.S1_at pmrna15661 hypothetical protein - 9e-19 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.03 1e-16 89 Triticum aestivum TaAffx.4445.1.S1_at CA741494 - - 1e-3 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.02 5e-4 46 Vitis vinifera 1620808_at AY039034.1 beta-glucosidase - 4e-10 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.01 2e-1 38 Zea mays Zm.7526.1.A1_at BM078809 hypothetical protein LOC100194111 - 8e-2 At3g02050 KUP3 (K+ UPTAKE TRANSPORTER 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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