Gene omics information

Query gene ID Os04g0473400
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7793.1Os04g0473400AK067896.1-60S ribosomal protein L62e-6At1g7405060S ribosomal protein L6 (RPL6C)S.X.H.G.
0.8094.6Os01g0721900AK121001.1-Hyaluronan/mRNA binding protein family protein3e-6At4g16830nuclear RNA-binding protein (RGGA)S.X.H.G.
0.7391.1Os08g0207000AK058705.1-40S ribosomal protein S11 (S18) (YS12) (RP41)4e-60At3g48930EMB1080 (embryo defective 1080)S.X.H.G.
0.6787.2Os03g0341100AK121580.1-60S ribosomal protein L182e-12At5g2785060S ribosomal protein L18 (RPL18C)S.X.H.G.
0.6787.2Os06g0562600AK067114.1-T-complex protein 1, epsilon subunit(TCP-1-epsilon) (CCT-epsilon) (TCP-K36)2e-88At1g24510T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeS.X.H.G.
0.4253.9Os02g0534800AK101459.1-40S ribosomal protein S14 (Clone MCH2)3e-67At3g1151040S ribosomal protein S14 (RPS14B)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.097.4GSM275411Azucena root tip_Buckled at the wax layer_rep1GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.697.3GSM275408Bala root tip_At the wax layer_rep1GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.397.2GSM275414Azucena root tip_Before the wax layer_rep1GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.297.1GSM275412Azucena root tip Buckled at the wax layer_rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.796.9GSM275406Azucena root tip_At the wax layer_rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.596.8GSM275407Azucena root tip_At the wax layer_rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.496.8GSM275416Azucena root tip_Before the wax layer_Rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.396.7GSM275405Azucena root tip_At the wax layer_rep1GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.996.5GSM275410Bala root tip_At the wax layer_rep3GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.796.4GSM275415Azucena root tip_Before the wax layer_Rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.599e-177621Os02g0591700AK072777.1-Ribosomal protein L6 (Fragment)9e-6At1g7406060S ribosomal protein L6 (RPL6B)C.G.S.X.
0.033e-448Os04g0413600AK121192.1-40S ribosomal protein S14 (Clone MCH2)4e-84At3g1151040S ribosomal protein S14 (RPS14B)C.G.S.X.
0.031e-346Os03g0307500AK107709.1-Hypothetical protein5e-3At5g25220KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)C.G.S.X.
0.014e-344Os02g0551700AK106428.1-Protein of unknown function DUF668 family protein8e-1At1g34320unknown proteinC.G.S.X.
0.014e-344Os03g0646300AK069229.1-Cyclic nucleotide-gated channel A (Fragment)3e-4At2g24610ATCNGC14C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.192e-654Arabidopsis thalianaAt1g7405084374460S ribosomal protein L6 (RPL6C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, plasma membrane, membrane;MOFPA---C.G.S.X.
0.219e-22105Glycine maxGma.10826.4.S1_atAI442855--5e-35At1g7405060S ribosomal protein L6 (RPL6C)C.G.S.X.
0.612e-131468Hordeum vulgareContig1248_s_atContig1248--3e-8At1g7406060S ribosomal protein L6 (RPL6B)C.G.S.X.
0.142e-1377Populus trichocarpaPtpAffx.549.1.A1_s_atCV247729hypothetical protein-1e-31At1g7405060S ribosomal protein L6 (RPL6C)C.G.S.X.
0.451e-63244Triticum aestivumTa.28291.1.S1_atBJ318276Ribosomal protein L6-2e-1At1g7405060S ribosomal protein L6 (RPL6C)C.G.S.X.
0.074e-857Vitis vinifera1621076_atCF207338hypothetical protein LOC100257150-6e-16At1g7405060S ribosomal protein L6 (RPL6C)C.G.S.X.
0.542e-121434Zea maysZm.14473.2.A1_atCK347999hypothetical protein LOC100191612-8e-3At1g7406060S ribosomal protein L6 (RPL6B)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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