CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0472000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os04g0472000 9632.m03753 - - 5e+1 At5g45490 disease resistance protein-related S.X. H.G.
0.57 77.0 Os10g0424100 9638.m02453 - BTB/POZ domain containing protein 7e+0 At3g24506 unknown protein S.X. H.G.
0.50 68.0 Os07g0584666 NM_186992.1 - - 5e+0 At3g32180 unknown protein S.X. H.G.
0.50 68.0 Os04g0512800 9632.m04152 - - 1e+1 At5g22170 unknown protein S.X. H.G.
0.47 62.3 Os03g0266500 9631.m01552 - - 3e+0 At2g11890 adenylate cyclase S.X. H.G.
0.46 60.9 Os01g0371900 NM_193844.1 - - 1e+1 At3g48570 protein transport protein SEC61 gamma subunit, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
105.2 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
45.0 99.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.3 99.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.5 99.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.5 99.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.4 99.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.1 99.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.1 98.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-1 38 Os04g0324800 9632.m02426 - - 4e+0 At4g12510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 4e-1 36 Os01g0864500 AK068115.1 - Harpin-induced 1 domain containing protein 8e+0 At5g47080 CKB1 C.G. S.X.
0.03 2e+0 34 Os01g0245600 9629.m01410 - Conserved hypothetical protein 6e+0 At5g55570 unknown protein C.G. S.X.
0.01 4e-1 36 Os03g0387900 AK063604.1 - Hypothetical protein 1e+0 At1g57620 emp24/gp25L/p24 family protein C.G. S.X.
0.01 4e-1 36 Os05g0467000 AK101942.1 - Calcium-dependent protein kinase 8e-45 At3g51850 CPK13 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e+1 28 Arabidopsis thaliana At5g45490 834585 disease resistance protein-related F:ATP binding;P:apoptosis;C:cellular_component unknown;PBFO - - - C.G. S.X.
0.05 1e+0 34 Glycine max GmaAffx.76380.1.S1_s_at BE583901 - - 3e+0 At5g32440 - C.G. S.X.
0.04 4e-1 34 Hordeum vulgare Contig17670_at Contig17670 - - 3e+0 At5g48420 unknown protein C.G. S.X.
0.04 4e+0 32 Populus trichocarpa PtpAffx.220556.1.S1_at pmrna36960 - - 2e-1 At1g54640 F-box family protein-related C.G. S.X.
0.04 1e-2 40 Triticum aestivum TaAffx.108752.1.S1_at CA684552 - - 1e+0 At4g22100 BGLU3 (BETA GLUCOSIDASE 2) C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1607234_at CF373784 - - 3e-1 Atmg00820 - C.G. S.X.
0.03 2e-2 38 Zea mays Zm.9865.1.A1_at CK826989 hypothetical protein LOC100276776 - 6e+0 At4g04020 FIB (FIBRILLIN) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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