CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0471700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.52 69.6 Os04g0471700 AY341851.1 - WRKY10 (WRKY transcription factor 35) 1e-3 At4g26440 WRKY34 (WRKY DNA-BINDING PROTEIN 34) S.X. H.G.
0.78 93.4 Os01g0147300 NM_184349.1 - Membrane protein 3e-12 At2g29050 ATRBL1 (Arabidopsis thaliana Rhomboid-like 1) S.X. H.G.
0.33 38.8 Os11g0582700 AK103872.1 - Cyclin-like F-box domain containing protein 7e-3 At5g11100 SYTD S.X. H.G.
0.31 34.5 Os05g0376600 AK073218.1 - GCN5-related N-acetyltransferase domain containingprotein 2e-2 At2g41450 N-acetyltransferase S.X. H.G.
0.29 31.1 Os12g0130900 AK066915.1 - TPR-like domain containing protein 3e-2 At1g76980 - S.X. H.G.
0.22 19.4 Os10g0561500 AK099675.1 - Protein kinase domain containing protein 2e-2 At4g25160 protein kinase family protein S.X. H.G.
0.19 15.1 Os07g0642400 NM_188825.1 - SNF2-related domain containing protein 2e-5 At5g05130 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein S.X. H.G.
0.16 11.3 Os12g0592500 AK073068.1 - Cyclin-like F-box domain containing protein 2e-1 At1g49910 WD-40 repeat family protein / mitotic checkpoint protein, putative S.X. H.G.
0.12 7.2 Os05g0251400 AK103883.1 - Conserved hypothetical protein 6e-4 At1g03180 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
93.5 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.6 99.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.5 99.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.8 99.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.1 99.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 9e-34 147 Os05g0343400 AK121190.1 - WRKY transcription factor 53 (Transcription factorWRKY12) 3e-7 At5g07100 WRKY26 C.G. S.X.
0.16 8e-25 117 Os05g0474800 AK119867.1 - WRKY transcription factor 70 3e-4 At4g26440 WRKY34 (WRKY DNA-BINDING PROTEIN 34) C.G. S.X.
0.14 2e-19 99 Os01g0826400 AY341849.1 - WRKY transcription factor 24 3e-7 At5g07100 WRKY26 C.G. S.X.
0.06 7e-13 77 Os01g0182700 AY341853.1 - WRKY transcription factor 34 1e-2 At2g44745 WRKY family transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-3 46 Arabidopsis thaliana At4g26440 828750 WRKY34 (WRKY DNA-BINDING PROTEIN 34) member of WRKY Transcription Factor; Group I - - - C.G. S.X.
0.02 5e-4 48 Glycine max GmaAffx.70101.1.S1_x_at BM886906 WRKY59 protein - 1e-7 At2g03340 WRKY3 C.G. S.X.
0.09 2e-7 57 Hordeum vulgare Contig15657_at Contig15657 - - 2e-9 At5g07100 WRKY26 C.G. S.X.
0.04 3e-11 71 Populus trichocarpa Ptp.2655.1.S1_at CK093499 hypothetical protein - 6e-10 At5g07100 WRKY26 C.G. S.X.
0.11 2e-15 85 Triticum aestivum Ta.4725.1.S1_at CK195830 WRKY transcription factor - 3e-7 At5g07100 WRKY26 C.G. S.X.
0.07 2e-6 54 Vitis vinifera 1610064_at CB341653 similar to DNA-binding protein - 3e-19 At2g38470 WRKY33 C.G. S.X.
0.05 6e-4 46 Zea mays Zm.8326.1.A1_at BM073693 - - 1e+0 At5g07100 WRKY26 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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