CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0470600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.9 Os04g0470600 9632.m03741 - Myb-related transcription factor LBM2 4e-20 At5g56110 ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103) S.X. H.G.
0.51 68.7 Os04g0405700 9632.m03185 - Conserved hypothetical protein 6e-1 At2g37300 unknown protein S.X. H.G.
0.50 68.0 Os10g0459000 NM_196845.1 - - 5e-6 At1g62240 unknown protein S.X. H.G.
0.48 63.7 Os06g0285100 9634.m01760 - - 8e-2 At5g38980 unknown protein S.X. H.G.
0.48 63.7 Os07g0216000 9635.m01130 - - 3e-1 At2g25090 CIPK16 (CBL-INTERACTING PROTEIN KINASE 16) S.X. H.G.
0.47 62.3 Os02g0490600 9630.m02756 - - 4e+0 At4g09840 unknown protein S.X. H.G.
0.45 58.8 Os04g0392000 9632.m03064 - - 4e-3 At2g35960 NHL12 S.X. H.G.
0.44 58.1 Os01g0207100 NM_188351.1 - - 2e-11 At3g14920 unknown protein S.X. H.G.
0.44 58.1 Os08g0184701 NM_190721.1 - - 5e-1 At2g16020 unknown protein S.X. H.G.
0.43 55.4 Os06g0565100 9634.m03512 - Cytochrome P450 family protein 6e+0 At5g16800 GCN5-related N-acetyltransferase (GNAT) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
67.8 99.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
48.5 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
31.4 99.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.9 99.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.7 99.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.0 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.7 99.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.1 98.8 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 1e-40 169 Os02g0579300 9630.m03526 - Myb, DNA-binding domain containing protein 3e-24 At3g01140 MYB106 (myb domain protein 106) C.G. S.X.
0.21 6e-27 123 Os07g0558100 Y11415.1 - Myb protein 2e-7 At4g05100 AtMYB74 (myb domain protein 74) C.G. S.X.
0.19 3e-35 151 Os04g0461000 9632.m03658 - Myb, DNA-binding domain containing protein 5e-14 At3g01140 MYB106 (myb domain protein 106) C.G. S.X.
0.19 6e-30 133 Os02g0641900 AK108621.1 - Myb7 protein (Fragment) 2e-7 At1g74080 MYB122 (MYB DOMAIN PROTEIN 122) C.G. S.X.
0.17 3e-32 141 Os12g0175400 D88618.1 - Conserved hypothetical protein 3e-36 At4g38620 MYB4 C.G. S.X.
0.14 3e-29 131 Os01g0874300 AK060684.1 - MybHv5 (Fragment) 7e-31 At4g38620 MYB4 C.G. S.X.
0.11 1e-28 129 Os04g0594100 AK111960.1 - MYB8 3e-16 At4g38620 MYB4 C.G. S.X.
0.07 3e-29 131 Os07g0497500 9635.m03085 - MYB transcription factor 1e-2 At5g12870 MYB46 (MYB DOMAIN PROTEIN 46) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 4e-20 99 Arabidopsis thaliana At5g56110 835710 ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103) Encodes a member of the R2R3 MYB transcription factor gene family that is required for anther development by regulation tapetum development, callose dissolution and exine formation. It acts upstream of MS2. - - - C.G. S.X.
0.05 5e-8 59 Glycine max GmaAffx.52752.1.S1_at BG653199 MYB transcription factor MYB179 - 2e-61 At4g38620 MYB4 C.G. S.X.
0.20 3e-13 75 Hordeum vulgare Contig9250_s_at Contig9250 - - 3e-19 At4g38620 MYB4 C.G. S.X.
0.41 3e-28 127 Populus trichocarpa PtpAffx.216294.1.S1_at pmrna30978 hypothetical protein - 3e-62 At5g56110 ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103) C.G. S.X.
0.15 7e-19 95 Triticum aestivum Ta.7314.1.S1_at CF133748 Myb-related protein - 2e-7 At3g12820 AtMYB10 (myb domain protein 10) C.G. S.X.
0.04 3e-3 42 Vitis vinifera 1621471_s_at AB073015.1 Myb transcription factor - 1e-6 At3g13540 ATMYB5 (MYB DOMAIN PROTEIN 5) C.G. S.X.
0.31 9e-35 147 Zea mays Zm.14527.1.S1_at BI542536 hypothetical protein LOC100279555 - 5e-15 At3g01140 MYB106 (myb domain protein 106) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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