CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0469000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os04g0469000 AK062816.1 - Heavy metal transport/detoxification proteindomain containing protein 1e+0 At3g52350 D111/G-patch domain-containing protein S.X. H.G.
0.14 9.3 Os05g0531000 AK120442.1 - Conserved hypothetical protein 9e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) S.X. H.G.
0.10 5.7 Os02g0518000 AK068281.1 - C2 calcium/lipid-binding region, CaLB domaincontaining protein 2e-1 At2g01080 - S.X. H.G.
0.04 2.0 Os06g0354700 AK068937.1 - Alpha/beta hydrolase fold domain containingprotein 5e-3 At5g13800 hydrolase, alpha/beta fold family protein S.X. H.G.
0.03 1.4 Os01g0925700 AU056525 - Protein kinase domain containing protein 7e-2 At1g54610 protein kinase family protein S.X. H.G.
0.01 0.5 Os02g0792800 AK105616.1 - Rieske iron-sulfur protein Tic55 precursor 2e-1 At5g23970 transferase family protein S.X. H.G.
0.01 0.5 Os05g0507300 AK060834.1 - Calreticulin 3 precursor 7e-23 At1g08450 CRT3 (CALRETICULIN 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.5 99.5 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
22.9 99.3 GSM431934 Shoot- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
22.8 99.3 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
18.4 99.0 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
17.9 98.9 GSM267998 Yellow leaves in F9Y RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
17.3 98.9 GSM431933 Shoot- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
16.4 98.8 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
10.5 98.1 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.8 97.8 GSM431935 Shoot- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
8.6 97.8 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 4e-76 286 Os04g0464100 AK120542.1 - Heavy metal transport/detoxification proteindomain containing protein 2e-2 At2g45695 - C.G. S.X.
0.34 4e-76 286 Os04g0469200 9632.m03729 - Heavy metal transport/detoxification proteindomain containing protein 9e-1 At4g29260 acid phosphatase class B family protein C.G. S.X.
0.03 3e-3 44 Os02g0585100 CR288740 - Heavy metal transport/detoxification proteindomain containing protein 3e-4 At5g53880 unknown protein C.G. S.X.
0.01 1e-2 42 Os03g0333200 AK099791.1 - Resistance protein candidate (Fragment) 2e-58 At3g51550 FER (FERONIA) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At3g52350 824400 D111/G-patch domain-containing protein F:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPO - - - C.G. S.X.
0.04 1e-1 38 Glycine max GmaAffx.11857.1.A1_at AW351021 - - 4e-2 At3g04510 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) C.G. S.X.
0.04 2e-1 36 Hordeum vulgare Contig3180_s_at Contig3180 - - 3e-30 At2g27020 PAG1 C.G. S.X.
0.06 1e-4 48 Populus trichocarpa PtpAffx.90513.2.S1_at CV267118 hypothetical protein - 2e+0 At5g23760 heavy-metal-associated domain-containing protein C.G. S.X.
0.26 3e-20 99 Triticum aestivum Ta.30769.1.S1_at CN010035 - - 3e-1 At5g64667 IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) C.G. S.X.
0.05 3e-2 38 Vitis vinifera 1618422_s_at CB340766 hypothetical protein LOC100252914 - 2e-3 At5g23760 heavy-metal-associated domain-containing protein C.G. S.X.
0.14 2e-6 52 Zea mays Zm.3568.1.A1_at BM080500 ATFP4 - 9e-2 At1g76180 ERD14 (EARLY RESPONSE TO DEHYDRATION 14) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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