Gene omics information

Query gene ID	Os04g0467000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	79.7	Os04g0467000	AK073154.1	-	Conserved hypothetical protein	2e+0	At4g30850	HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.92	99.1	Os10g0459700	AK110328.1	-	Xyloglucan galactosyltransferase	7e-2	At4g13990	exostosin family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	Os04g0494600	AK110895.1	-	Protein of unknown function DUF642 family protein	5e-2	At3g17410	serine/threonine protein kinase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os07g0524900	AK071512.1	-	Protein of unknown function DUF6 domain containingprotein	3e+0	At4g16240	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os02g0183000	9630.m00818	-	Zinc-binding protein	2e-5	At2g12646	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os08g0253800	AK108045.1	-	Glycosyl transferase, family 2 domain containingprotein	7e-14	At4g31590	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os02g0454500	AK064156.1	-	Membrane bound O-acyl transferase, MBOAT familyprotein	5e-5	At5g55360	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.4	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
22.8	99.3	GSM275416	Azucena root tip_Before the wax layer_Rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
17.5	98.9	GSM275407	Azucena root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
17.3	98.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7	98.7	GSM275410	Bala root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
15.5	98.7	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8	98.6	GSM275405	Azucena root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
14.4	98.6	GSM275414	Azucena root tip_Before the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
13.6	98.5	GSM275413	Azucena root tip_Buckled at the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
12.7	98.4	GSM275406	Azucena root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-1	36	Os01g0969000	AK103338.1	-	Conserved hypothetical protein	1e+0	At2g45695	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-2	42	Os05g0494600	AK108158.1	-	Conserved hypothetical protein	2e+0	At3g63060	EDL3 (EID1-like 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	9e-1	36	Os03g0406300	9631.m02853	-	-	1e-1	At1g72490	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	9e-1	36	Os08g0107600	AK119294.1	-	DNA repair metallo-beta-lactamase domaincontaining protein	1e+0	At1g19025	DNA cross-link repair protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	9e-1	36	Os11g0293800	9639.m01747	-	-	3e-10	At4g20370	TSF (TWIN SISTER OF FT)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	38	Os02g0188000	AK105236.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	5e-2	At2g23250	UGT84B2 (UDP-glucosyl transferase 84B2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	38	Os02g0566400	AK101019.1	-	Conserved hypothetical protein	4e-3	At4g29460	phospholipase A2 gamma, secretory low molecular weight	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	9e-1	36	Os04g0626700	AK106652.1	-	Conserved hypothetical protein	1e+0	At4g02260	RSH1 (RELA-SPOT HOMOLOG 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At4g30850	829209	HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)	heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	HgAffx.17529.1.S1_at	CB935361	-	-	4e-3	At4g02430	pre-mRNA splicing factor, putative / SR1 protein, putative	C.G.	S.X.	Please select
0.03	4e+0	32	Hordeum vulgare	HM05O08r_at	HM05O08r	-	-	5e-15	At4g39200	40S ribosomal protein S25 (RPS25E)	C.G.	S.X.	Please select
0.03	7e-1	36	Populus trichocarpa	PtpAffx.203882.1.S1_x_at	pmrna7667	f-box family protein	-	2e-9	At5g60850	OBP4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.79566.1.S1_at	CA712964	-	-	8e-1	At1g76200	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1613851_at	CD800992	hypothetical protein LOC100244739	-	2e+0	At4g08039	-	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.19201.2.A1_at	CO526388	Hypothetical protein LOC100216991	-	2e+0	At5g39650	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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