Gene omics information

Query gene ID	Os04g0462400
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	82.7	Os04g0462400	9632.m03670	-	Lysine and histidine specific transporter	1e-5	At1g25530	lysine and histidine specific transporter, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os04g0610900	AK120898.1	-	EDR1	9e-5	At4g24480	serine/threonine protein kinase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os04g0588700	AK099941.1	-	ABC transporter, transmembrane region domaincontaining protein	9e-6	At3g59140	ATMRP14	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os12g0490000	CA762266	-	Mitochodrial transcription terminationfactor-related family protein	5e+0	At4g08170	inositol 1,3,4-trisphosphate 5/6-kinase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	Os04g0565900	AK109094.1	-	Basic helix-loop-helix dimerisation region bHLHdomain containing protein	2e-1	At1g61660	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	Os12g0454800	AY572461.1	-	Histidine kinase	7e-3	At5g10530	lectin protein kinase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os02g0579600	AY177696.1	-	Transcription factor MADS27	7e-19	At3g57230	AGL16 (AGAMOUS-LIKE 16)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.6	99.5	GSM262007	IAC165, 11 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
25.4	99.5	GSM262004	IAC165, 4 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
25.3	99.5	GSM262006	IAC165, 11 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
23.4	99.4	GSM262005	IAC165, 4 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
18.5	99.0	GSM261999	IAC165, 2 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
16.6	98.8	GSM262001	IAC165, 2 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
15.6	98.7	GSM262002	IAC165, 4 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.7	98.6	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.5	98.5	GSM262008	IAC165, 11 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
13.4	98.5	GSM262009	IAC165, 11 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	1e-22	109	Os08g0127100	AK065217.1	-	Lysine and histidine specific transporter	3e-19	At5g40780	LHT1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.28	2e-27	125	Os12g0244400	AK070297.1	-	Amino acid/polyamine transporter II family protein	7e-14	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.28	2e-9	65	Os05g0237800	9633.m01302	-	-	3e-3	At3g01760	lysine and histidine specific transporter, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	1e-7	59	Os08g0168700	9636.m00655	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e-1	At3g17670	binding	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	4e-4	48	Os04g0181000	9632.m00895	-	-	3e-1	At2g20260	PSAE-2 (photosystem I subunit E-2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	4e-4	48	Os12g0267900	AK072042.1	-	Zn-finger, RING domain containing protein	3e-2	At1g12810	proline-rich family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-5	52	Arabidopsis thaliana	At1g25530	839139	lysine and histidine specific transporter, putative	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	PsAffx.psHA003iA02r_at	PsAffx.psHA003iA02r	-	-	9e-1	At1g15015	-	C.G.	S.X.	Please select
0.50	1e-173	609	Hordeum vulgare	Contig15915_at	Contig15915	-	-	2e-3	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.06	3e-1	38	Populus trichocarpa	PtpAffx.208967.1.S1_s_at	pmrna17773	lysine/histidine transporter	-	1e-11	At1g25530	lysine and histidine specific transporter, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	7e-35	149	Triticum aestivum	TaAffx.24751.1.S1_at	CA713136	-	-	2e-1	At1g25530	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select
0.02	3e-3	42	Vitis vinifera	1621384_at	AY046417.1	proline rich protein 2	-	2e+0	Atmg01250	-	C.G.	S.X.	Please select
0.19	6e-15	81	Zea mays	Zm.15307.1.A1_at	CF014037	-	-	2e-11	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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