Gene omics information

Query gene ID	Os04g0458900
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os04g0458900	AK121454.1	-	Pectin methylesterase-like protein	7e-2	At2g47030	VGDH1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	Os04g0489800	AK100423.1	-	ARM repeat fold domain containing protein	2e-3	At1g24330	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	Os04g0641200	AK100257.1	-	Pectinesterase (EC 3.1.1.11) (Fragment)	4e-1	At2g47040	VGD1 (VANGUARD1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os01g0657000	AK108727.1	-	-	2e+0	At5g53250	AGP22 (ARABINOGALACTAN PROTEIN 22)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os03g0738700	AK111764.1	-	WD40-like domain containing protein	4e+0	At2g26490	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os11g0512800	AK064740.1	-	Hypothetical protein	6e+0	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
353.3	100.0	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
8.0	97.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2	97.4	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1	96.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1	96.6	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1	96.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8	96.5	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7	96.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7	96.4	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.4	96.2	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	2e-31	139	Os09g0433700	AK072369.1	-	Pectinmethylesterase precursor (EC 3.1.1.11)(Fragment)	7e-2	At4g15980	pectinesterase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	2e-28	129	Os01g0312500	AK105998.1	-	Pectin methylesterase isoform alpha (EC 3.1.1.11)(Fragment)	2e-2	At3g14310	ATPME3	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	1e-23	113	Os08g0450200	AK072779.1	-	Pectinmethylesterase precursor (EC 3.1.1.11)(Fragment)	7e-2	At1g11580	PMEPCRA (METHYLESTERASE PCR A)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	2e-15	85	Os08g0450100	AK058651.1	-	Pectinesterase (EC 3.1.1.11) (Fragment)	2e-2	At1g11370	pectinesterase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	1e-14	83	Os05g0361500	AK100947.1	-	Pectinesterase family protein	2e-5	At1g02810	pectinesterase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	6e-13	77	Os03g0399000	AK069492.1	-	Pectinesterase family protein	1e-3	At3g06830	pectinesterase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	9e-12	73	Os01g0254300	NM_187890.1	-	Pectinesterase (EC 3.1.1.11) (Fragment)	1e-3	At3g06830	pectinesterase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	6e-13	77	Os03g0398900	AK107457.1	-	Conserved hypothetical protein	9e-4	At3g06830	pectinesterase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-2	40	Arabidopsis thaliana	At2g47030	819317	VGDH1	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-4	50	Glycine max	GmaAffx.71146.1.S1_at	BM527181	-	-	8e-2	At2g47040	VGD1 (VANGUARD1)	C.G.	S.X.	Please select
0.12	7e-25	115	Hordeum vulgare	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	C.G.	S.X.	Please select
0.03	4e-1	38	Populus trichocarpa	PtpAffx.200575.1.S1_at	pmrna1145	hypothetical protein	-	2e-1	At3g60730	pectinesterase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	0	924	Triticum aestivum	Ta.5588.1.A1_at	BJ249930	-	-	9e-3	At3g06830	pectinesterase family protein	C.G.	S.X.	Please select
0.05	1e-9	63	Vitis vinifera	1610996_at	BQ794786	pectinesterase	-	2e-9	At1g53840	ATPME1	C.G.	S.X.	Please select
0.69	0	1065	Zea mays	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0042545	The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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