Gene omics information

Query gene ID	Os04g0453400
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os04g0453400	AK070018.1	-	Sugar transporter family protein	1e-2	At4g21480	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	5.7	Os06g0636600	AK119586.1	-	Protein kinase domain containing protein	5e-18	At1g62400	HT1 (high leaf temperature 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	5.7	Os08g0510700	AK101254.1	-	Myb, DNA-binding domain containing protein	5e-3	At4g16240	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	Os09g0565400	AK067821.1	-	Lipoprotein, type 6 family protein	2e-2	At1g24560	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2.0	Os03g0581600	BQ906717	-	DAG protein, chloroplast precursor	8e-5	At1g11430	plastid developmental protein DAG, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2.0	Os09g0513900	AK107699.1	-	Conserved hypothetical protein	3e-1	At2g47480	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.6	99.6	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
20.7	99.2	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.5	98.5	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7	98.0	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8	97.8	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-13	79	Os04g0452600	9632.m03579	-	Sugar transporter family protein	8e-1	At5g61520	hexose transporter, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.30	2e-24	115	Os04g0452700	AK108820.1	-	Monosaccharide transporter 1	4e-6	At1g34580	monosaccharide transporter, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	2e-31	139	Os04g0454200	AK072059.1	-	Monosaccharide transporter 1	6e-2	At1g34580	monosaccharide transporter, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	9e-21	103	Os04g0453200	AK121306.1	-	Monosaccharide transporter 1	7e-2	At1g34580	monosaccharide transporter, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	9e-21	103	Os02g0573500	AK121678.1	-	Monosaccharide transporter 1	2e-1	At4g21480	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	1e-19	99	Os04g0453300	9632.m03584	-	Monosaccharide transporter 1	7e-1	At1g11260	STP1 (SUGAR TRANSPORTER 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	2e-15	85	Os04g0454801	9632.m03610	-	-	3e-1	At1g11260	STP1 (SUGAR TRANSPORTER 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-2	42	Arabidopsis thaliana	At4g21480	828233	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	PsAffx.C27000102_at	PsAffx.C27000102	-	-	1e-1	At5g62100	ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)	C.G.	S.X.	Please select
0.66	0	1122	Hordeum vulgare	Contig7293_at	Contig7293	-	-	1e+1	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.02	5e+0	34	Populus trichocarpa	PtpAffx.224644.1.S1_at	pmrna43389	-	-	5e-2	At1g11260	STP1 (SUGAR TRANSPORTER 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	2e-109	397	Triticum aestivum	TaAffx.78380.1.S1_at	CA733390	-	-	1e-3	At5g26340	MSS1	C.G.	S.X.	Please select
0.01	4e+0	32	Vitis vinifera	1610883_at	CD797323	-	-	2e-1	At5g33300	chromosome-associated kinesin-related	C.G.	S.X.	Please select
0.18	5e-25	115	Zea mays	Zm.13072.1.S1_at	CD438321	hypothetical protein LOC100193044	-	7e+0	At5g12880	proline-rich family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006810	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
L	GO:0008643	The directed movement of carbohydrate into, out of, within or between cells. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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