Gene omics information

Query gene ID	Os04g0448600
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.52	69.6	Os04g0448600	AK068709.1	-	ChaC-like protein family protein	2e-3	At1g44790	ChaC-like family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.78	93.4	Os07g0171100	AK066475.1	-	TPR-like domain containing protein	2e-16	At1g55480	binding / protein binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	Os01g0912700	AK068528.1	-	Conserved hypothetical protein	1e-1	At2g01340	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	Os12g0420200	CB652532	-	38 kDa ribosome-associated protein	1e+0	At1g31250	proline-rich family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	Os08g0162600	AK060121.1	-	Rubredoxin-type Fe(Cys)4 protein family protein	6e-22	At5g17170	ENH1 (enhancer of sos3-1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	Os03g0311300	AK073167.1	-	The start codon is not identified.	1e-27	At1g56500	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	Os02g0764500	AK066291.1	-	Lhca5 protein	8e-3	At1g45474	LHCA5	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os11g0242400	AK067025.1	-	Rieske [2Fe-2S] region domain containing protein	1e-1	At1g71500	Rieske (2Fe-2S) domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os04g0490800	AK066522.1	-	4-nitrophenylphosphatase-like protein	1e-28	At5g36700	PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.8	98.1	GSM174885	B FR13 3 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
9.9	98.0	GSM174883	A mock 3 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
8.9	97.8	GSM174888	C mock 3 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
8.6	97.8	GSM421686	XOC, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.3	97.7	GSM174887	D FR13 3 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
7.9	97.6	GSM421726	MOCK, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.7	97.6	GSM174890	G mock 4 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
7.5	97.5	GSM421706	XOO, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.3	97.5	GSM174884	E mock 4 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
6.8	97.3	GSM421702	XOO, 24 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	38	Os02g0465900	AB112061.1	-	ChaC-like protein family protein	3e-3	At4g31290	ChaC-like family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	1e+0	36	Os10g0208100	NM_195492.1	-	-	8e+0	At2g23780	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-2	42	Os06g0162800	U78890.1	-	MADS box protein	6e-4	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	3e-1	38	Os12g0103200	9640.m00025	-	-	4e-1	At3g24750	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e+0	36	Os11g0191100	9639.m00813	-	-	4e-1	At1g53610	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-1	38	Os04g0616400	AK099657.1	-	Receptor-like serine/threonine kinase	1e-4	At1g56145	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-1	38	Os06g0614300	AK070178.1	-	Cyclase-associated protein domain containingprotein	2e-11	At3g57890	tubulin-specific chaperone C-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-3	44	Arabidopsis thaliana	At1g44790	841043	ChaC-like family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-1	38	Glycine max	Gma.13488.1.S1_at	AW760766	-	-	1e-6	At1g44790	ChaC-like family protein	C.G.	S.X.	Please select
0.53	0	662	Hordeum vulgare	Contig8561_at	Contig8561	-	-	1e-4	At4g31290	ChaC-like family protein	C.G.	S.X.	Please select
0.06	3e-3	44	Populus trichocarpa	Ptp.5830.1.S1_at	CV255078	hypothetical protein	-	2e-6	At1g44790	ChaC-like family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	2e-170	599	Triticum aestivum	Ta.9452.1.A1_at	CK151812	-	-	1e-4	At4g31290	ChaC-like family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1615895_at	CD718796	hypothetical protein LOC100244972	-	3e-4	At5g07070	CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.42	5e-132	470	Zea mays	Zm.7963.1.A1_at	CK348034	cation transport protein chaC	-	1e-1	At1g72080	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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