CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os04g0447100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os04g0447100 9632.m03516 - Lipoxygenase 2e-5 At1g72520 lipoxygenase, putative S.X. H.G.
0.77 93.1 Os01g0905200 AK067779.1 - Exo70 exocyst complex subunit family protein 3e-1 At1g06250 lipase class 3 family protein S.X. H.G.
0.71 89.6 Os01g0194000 AK058353.1 - Conserved hypothetical protein 2e-2 At3g29000 calcium-binding EF hand family protein S.X. H.G.
0.67 87.2 Os04g0412300 AK110902.1 - Glycoside hydrolase, family 17 protein 3e+0 At5g42100 ATBG_PAP S.X. H.G.
0.50 68.0 Os05g0495700 AK101484.1 - Glycerol-3-phosphate dehydrogenase-like protein(Fragment) 1e-18 At2g41540 GPDHC1 S.X. H.G.
0.40 51.1 Os03g0264300 NM_187446.1 - Protein kinase domain containing protein 4e-5 At1g16670 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.4 99.9 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
36.8 99.8 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
33.8 99.8 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
18.7 99.0 GSM375773 slr1 (k1001)_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
16.1 98.7 GSM375775 slr1 (k1001)_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
15.5 98.7 GSM375777 slr1 (k1001)_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
15.3 98.7 GSM375772 gid2-1_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
15.0 98.6 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
12.8 98.4 GSM375770 gid2-1_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.2 97.7 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 5e-45 184 Os03g0179900 AK121637.1 - Lipoxygenase (EC 1.13.11.12) 4e-4 At1g72520 lipoxygenase, putative C.G. S.X.
0.19 5e-11 71 Os08g0508800 D14000.1 - Lipoxygenase, chloroplast precursor (EC1.13.11.12) 2e+0 At3g15830 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.17 5e-14 81 Os08g0509100 AK066825.1 - Lipoxygenase, chloroplast precursor (EC1.13.11.12) 6e+0 At4g14723 - C.G. S.X.
0.15 1e-11 73 Os02g0194700 AK071915.1 - Plant lipoxygenase family protein 4e-1 At5g66010 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.08 3e-12 75 Os12g0559200 BM421235 - Lipoxygenase (EC 1.13.11.12) 2e+0 At5g57750 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 8e-10 67 Os03g0738600 AK073529.1 - Lipoxygenase L-2 (EC 1.13.11.12) 2e+0 At1g55020 LOX1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-5 52 Arabidopsis thaliana At1g72520 843584 lipoxygenase, putative F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFO - - - C.G. S.X.
0.02 8e-6 54 Glycine max GmaAffx.70690.1.S1_at AI736267 - - 3e-6 At1g72520 lipoxygenase, putative C.G. S.X.
0.18 2e-106 387 Hordeum vulgare Contig26335_at Contig26335 - - 5e+0 At4g04840 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
0.02 5e-1 38 Populus trichocarpa PtpAffx.141124.3.S1_a_at CV240940 hypothetical protein - 5e-1 At4g28815 transcription regulator C.G. S.X.
0.12 5e-68 260 Triticum aestivum Ta.12757.1.A1_at CD935100 - - 5e+0 At1g15630 unknown protein C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1609442_at CF373210 hypothetical protein LOC100243127 - 3e-4 At3g05800 transcription factor C.G. S.X.
0.22 7e-121 434 Zea mays ZmAffx.1005.1.A1_at AI881362 Lipoxygenase - 3e+0 At1g04130 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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